Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 52N    

Bonds between two atoms of the molecule

Total Number of Bonds: 96


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C6 C C sing 1.53 N N
2 C1 C2 C C sing 1.53 N N
3 C1 O1 C O sing 1.43 N N
4 C1 H1 C H sing 1.09 N N
5 O1 P1 O P sing 1.61 N N
6 O13 P1 O P sing 1.61 N N
7 P1 O11 P O doub 1.48 N N
8 P1 O12 P O sing 1.61 N N
9 O2 C2 O C sing 1.43 N N
10 C3 C2 C C sing 1.53 N N
11 C2 H2 C H sing 1.09 N N
12 O2 HO2 O H sing 0.97 N N
13 C4 C3 C C sing 1.53 N N
14 O3 C3 O C sing 1.43 N N
15 C3 H3 C H sing 1.09 N N
16 O3 P3 O P sing 1.61 N N
17 O33 P3 O P doub 1.48 N N
18 P3 O31 P O sing 1.61 N N
19 P3 O32 P O sing 1.61 N N
20 O4 C4 O C sing 1.43 N N
21 C4 C5 C C sing 1.53 N N
22 C4 H4 C H sing 1.09 N N
23 P4 O4 P O sing 1.61 N N
24 O42 P4 O P doub 1.48 N N
25 P4 O43 P O sing 1.61 N N
26 P4 O41 P O sing 1.61 N N
27 O5 C5 O C sing 1.43 N N
28 C5 C6 C C sing 1.53 N N
29 C5 H5 C H sing 1.09 N N
30 O5 HO5 O H sing 0.97 N N
31 O6 C6 O C sing 1.43 N N
32 C6 H6 C H sing 1.09 N N
33 O6 HO6 O H sing 0.97 N N
34 O13 C7 O C sing 1.43 N N
35 C8 C7 C C sing 1.53 N N
36 C7 H7 C H sing 1.09 N N
37 C7 H7A C H sing 1.09 N N
38 O14 C8 O C sing 1.45 N N
39 C8 C9 C C sing 1.53 N N
40 C8 H8 C H sing 1.09 N N
41 C9 O15 C O sing 1.45 N N
42 C9 H9 C H sing 1.09 N N
43 C9 H9A C H sing 1.09 N N
44 O15 C10 O C sing 1.34 N N
45 C10 C11 C C sing 1.51 N N
46 C10 O16 C O doub 1.21 N N
47 C11 C12 C C sing 1.53 N N
48 C11 H11 C H sing 1.09 N N
49 C11 H11A C H sing 1.09 N N
50 C12 C13 C C sing 1.53 N N
51 C12 H12 C H sing 1.09 N N
52 C12 H12A C H sing 1.09 N N
53 O12 HO12 O H sing 0.97 N N
54 C13 C14 C C sing 1.53 N N
55 C13 H13 C H sing 1.09 N N
56 C13 H13A C H sing 1.09 N N
57 C14 C15 C C sing 1.53 N N
58 C14 H14 C H sing 1.09 N N
59 C14 H14A C H sing 1.09 N N
60 C18 O14 C O sing 1.34 N N
61 C15 C16 C C sing 1.53 N N
62 C15 H15 C H sing 1.09 N N
63 C15 H15A C H sing 1.09 N N
64 C16 C17 C C sing 1.53 N N
65 C16 H16 C H sing 1.09 N N
66 C16 H16A C H sing 1.09 N N
67 C17 H17 C H sing 1.09 N N
68 C17 H17A C H sing 1.09 N N
69 C17 H17B C H sing 1.09 N N
70 C18 O17 C O doub 1.21 N N
71 C19 C18 C C sing 1.51 N N
72 C20 C19 C C sing 1.53 N N
73 C19 H19 C H sing 1.09 N N
74 C19 H19A C H sing 1.09 N N
75 C20 C21 C C sing 1.53 N N
76 C20 H20 C H sing 1.09 N N
77 C20 H20A C H sing 1.09 N N
78 C22 C21 C C sing 1.53 N N
79 C21 H21 C H sing 1.09 N N
80 C21 H21A C H sing 1.09 N N
81 C23 C22 C C sing 1.53 N N
82 C22 H22 C H sing 1.09 N N
83 C22 H22A C H sing 1.09 N N
84 C23 C24 C C sing 1.53 N N
85 C23 H23 C H sing 1.09 N N
86 C23 H23A C H sing 1.09 N N
87 C24 C25 C C sing 1.53 N N
88 C24 H24 C H sing 1.09 N N
89 C24 H24A C H sing 1.09 N N
90 C25 H25 C H sing 1.09 N N
91 C25 H25A C H sing 1.09 N N
92 C25 H25B C H sing 1.09 N N
93 O31 HO31 O H sing 0.97 N N
94 O32 HO32 O H sing 0.97 N N
95 O41 HO41 O H sing 0.97 N N
96 O43 HO43 O H sing 0.97 N N