Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 478    

Bonds between two atoms of the molecule

Total Number of Bonds: 72


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C4 C C sing 1.54 N N
2 C1 O6 C O sing 1.44 N N
3 C1 H11A C H sing 1.09 N N
4 C1 H12A C H sing 1.09 N N
5 C2 C4 C C sing 1.55 N N
6 C2 C25 C C sing 1.55 N N
7 C2 H21A C H sing 1.09 N N
8 C2 H22A C H sing 1.09 N N
9 C3 N1 C N sing 1.35 N N
10 C3 O1 C O sing 1.35 N N
11 C3 O2 C O doub 1.21 N N
12 C4 O1 C O sing 1.45 N N
13 C4 H4 C H sing 1.09 N N
14 C5 C6 C C sing 1.53 N N
15 C5 C7 C C sing 1.53 N N
16 C5 N1 C N sing 1.46 N N
17 C5 H5 C H sing 1.09 N N
18 C6 C14 C C sing 1.53 N N
19 C6 O3 C O sing 1.43 N N
20 C6 H6 C H sing 1.09 N N
21 C7 C8 C C sing 1.51 N N
22 C7 H71 C H sing 1.09 N N
23 C7 H72 C H sing 1.09 N N
24 C8 C9 C C doub 1.38 N Y
25 C8 C10 C C sing 1.38 N Y
26 C9 C11 C C sing 1.38 N Y
27 C9 H9 C H sing 1.08 N N
28 C10 C12 C C doub 1.38 N Y
29 C10 H10 C H sing 1.08 N N
30 C11 C13 C C doub 1.38 N Y
31 C11 H11 C H sing 1.08 N N
32 C12 C13 C C sing 1.38 N Y
33 C12 H12 C H sing 1.08 N N
34 C13 H13 C H sing 1.08 N N
35 C14 N2 C N sing 1.47 N N
36 C14 H141 C H sing 1.09 N N
37 C14 H142 C H sing 1.09 N N
38 C15 C16 C C sing 1.53 N N
39 C15 N2 C N sing 1.46 N N
40 C15 H151 C H sing 1.09 N N
41 C15 H152 C H sing 1.09 N N
42 C16 C23 C C sing 1.53 N N
43 C16 C24 C C sing 1.53 N N
44 C16 H16 C H sing 1.09 N N
45 C17 C18 C C doub 1.38 N Y
46 C17 C22 C C sing 1.38 N Y
47 C17 S1 C S sing 1.76 N N
48 C18 C19 C C sing 1.38 N Y
49 C18 H18 C H sing 1.08 N N
50 C19 C20 C C doub 1.39 N Y
51 C19 H19 C H sing 1.08 N N
52 C20 C21 C C sing 1.39 N Y
53 C20 N3 C N sing 1.4 N N
54 C21 C22 C C doub 1.38 N Y
55 C21 H21 C H sing 1.08 N N
56 C22 H22 C H sing 1.08 N N
57 C23 H231 C H sing 1.09 N N
58 C23 H232 C H sing 1.09 N N
59 C23 H233 C H sing 1.09 N N
60 C24 H241 C H sing 1.09 N N
61 C24 H242 C H sing 1.09 N N
62 C24 H243 C H sing 1.09 N N
63 C25 O6 C O sing 1.44 N N
64 C25 H251 C H sing 1.09 N N
65 C25 H252 C H sing 1.09 N N
66 N1 HN1 N H sing 0.97 N N
67 N2 S1 N S sing 1.66 N N
68 N3 HN31 N H sing 0.97 N N
69 N3 HN32 N H sing 0.97 N N
70 O3 HO3 O H sing 0.97 N N
71 O4 S1 O S doub 1.42 N N
72 O5 S1 O S doub 1.42 N N