Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 44Z    

Bonds between two atoms of the molecule

Total Number of Bonds: 78


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CM1 O3 C O sing 1.43 N N
2 O3 CZ3 O C sing 1.36 N N
3 CZ3 CE5 C C doub 1.39 N Y
4 CZ3 CE6 C C sing 1.39 N Y
5 CE5 CD5 C C sing 1.38 N Y
6 CE6 CD6 C C doub 1.38 N Y
7 C9 CM2 C C sing 1.53 N N
8 C9 CM3 C C sing 1.53 N N
9 C9 O6 C O sing 1.43 N N
10 CD6 O6 C O sing 1.36 N N
11 CD6 CG3 C C sing 1.4 N Y
12 CD5 CG3 C C doub 1.4 N Y
13 CG3 C6 C C sing 1.48 N N
14 C6 N C N doub 1.29 N N
15 C6 N3 C N sing 1.38 N N
16 N C7 N C sing 1.47 N N
17 O1 C1 O C doub 1.21 N N
18 C3 N2 C N sing 1.47 N N
19 C3 C2 C C sing 1.53 N N
20 C1 C4 C C sing 1.5 N N
21 C1 N1 C N sing 1.33 N N
22 C4 N2 C N sing 1.47 N N
23 CE1 CD1 C C doub 1.38 N Y
24 CE1 CZ1 C C sing 1.38 N Y
25 CD1 CG1 C C sing 1.38 N Y
26 N2 C5 N C sing 1.35 N N
27 N1 C2 N C sing 1.46 N N
28 CD3 CE3 C C doub 1.38 N Y
29 CD3 CG2 C C sing 1.38 N Y
30 N3 C5 N C sing 1.35 N N
31 N3 C8 N C sing 1.47 N N
32 C5 O5 C O doub 1.21 N N
33 CE3 CZ2 C C sing 1.38 N Y
34 C7 CG2 C C sing 1.51 N N
35 C7 C8 C C sing 1.54 N N
36 CG2 CD4 C C doub 1.38 N Y
37 CL CZ1 CL C sing 1.74 N N
38 CZ1 CE2 C C doub 1.38 N Y
39 CG1 C8 C C sing 1.51 N N
40 CG1 CD2 C C doub 1.38 N Y
41 CZ2 CE4 C C doub 1.39 N Y
42 CD4 CE4 C C sing 1.39 N Y
43 CE2 CD2 C C sing 1.38 N Y
44 CE4 O4 C O sing 1.36 N N
45 O4 CM4 O C sing 1.43 N N
46 N1 H1 N H sing 0.97 N N
47 C2 H21 C H sing 1.09 N N
48 C2 H22 C H sing 1.09 N N
49 C3 H32 C H sing 1.09 N N
50 C3 H31 C H sing 1.09 N N
51 C4 H42 C H sing 1.09 N N
52 C4 H41 C H sing 1.09 N N
53 C7 H7 C H sing 1.09 N N
54 C8 H8 C H sing 1.09 N N
55 CD1 HD1 C H sing 1.08 N N
56 CE1 HE1 C H sing 1.08 N N
57 CE2 HE2 C H sing 1.08 N N
58 CD2 HD2 C H sing 1.08 N N
59 CD3 HD3 C H sing 1.08 N N
60 CE3 HE3 C H sing 1.08 N N
61 CZ2 HZ2 C H sing 1.08 N N
62 CD4 HD4 C H sing 1.08 N N
63 CD5 HD5 C H sing 1.08 N N
64 CE5 HE5 C H sing 1.08 N N
65 CE6 HE6 C H sing 1.08 N N
66 C9 H9 C H sing 1.09 N N
67 CM2 HM23 C H sing 1.09 N N
68 CM2 HM21 C H sing 1.09 N N
69 CM2 HM22 C H sing 1.09 N N
70 CM3 HM33 C H sing 1.09 N N
71 CM3 HM32 C H sing 1.09 N N
72 CM3 HM31 C H sing 1.09 N N
73 CM1 HM12 C H sing 1.09 N N
74 CM1 HM13 C H sing 1.09 N N
75 CM1 HM11 C H sing 1.09 N N
76 CM4 HM43 C H sing 1.09 N N
77 CM4 HM42 C H sing 1.09 N N
78 CM4 HM41 C H sing 1.09 N N