Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 2NC    

Bonds between two atoms of the molecule

Total Number of Bonds: 121


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C O C O doub 1.21 N N
2 C CH3 C C sing 1.51 N N
3 CH3 H1 C H sing 1.09 N N
4 CH3 H2 C H sing 1.09 N N
5 CH3 H3 C H sing 1.09 N N
6 N CA N C sing 1.47 N N
7 N H N H sing 0.97 N N
8 CA C1 C C sing 1.51 N N
9 CA CB C C sing 1.53 N N
10 CA HA C H sing 1.09 N N
11 C1 O1 C O doub 1.21 N N
12 CB OG1 C O sing 1.43 N N
13 CB CG2 C C sing 1.53 N N
14 CB HB C H sing 1.09 N N
15 OG1 HG1 O H sing 0.97 N N
16 CG2 HG21 C H sing 1.09 N N
17 CG2 HG22 C H sing 1.09 N N
18 CG2 HG23 C H sing 1.09 N N
19 N1 CA1 N C sing 1.47 N N
20 N1 H4 N H sing 0.97 N N
21 CA1 C2 C C sing 1.51 N N
22 CA1 CB1 C C sing 1.53 N N
23 CA1 HA1 C H sing 1.09 N N
24 C2 O2 C O doub 1.21 N N
25 CB1 CG1 C C sing 1.53 N N
26 CB1 CG21 C C sing 1.53 N N
27 CB1 HB1 C H sing 1.09 N N
28 CG1 CD1 C C sing 1.53 N N
29 CG1 HG12 C H sing 1.09 N N
30 CG1 HG13 C H sing 1.09 N N
31 CG21 HG24 C H sing 1.09 N N
32 CG21 HG25 C H sing 1.09 N N
33 CG21 HG26 C H sing 1.09 N N
34 CD1 HD11 C H sing 1.09 N N
35 CD1 HD12 C H sing 1.09 N N
36 CD1 HD13 C H sing 1.09 N N
37 N2 CA2 N C sing 1.46 N N
38 N2 H5 N H sing 0.97 N N
39 CA2 C3 C C sing 1.53 N N
40 CA2 CB2 C C sing 1.53 N N
41 CA2 HA2 C H sing 1.09 N N
42 CB2 CG C C sing 1.53 N N
43 CB2 HB2 C H sing 1.09 N N
44 CB2 HB3 C H sing 1.09 N N
45 CG CD C C sing 1.53 N N
46 CG HG2 C H sing 1.09 N N
47 CG HG3 C H sing 1.09 N N
48 CD CE C C sing 1.53 N N
49 CD HD2 C H sing 1.09 N N
50 CD HD3 C H sing 1.09 N N
51 CE HE1 C H sing 1.09 N N
52 CE HE2 C H sing 1.09 N N
53 CE HE3 C H sing 1.09 N N
54 N3 CA3 N C sing 1.47 N N
55 N3 H6 N H sing 1.01 N N
56 CA3 C4 C C sing 1.51 N N
57 CA3 CB3 C C sing 1.53 N N
58 CA3 HA3 C H sing 1.09 N N
59 C4 O3 C O doub 1.21 N N
60 CB3 CG3 C C sing 1.53 N N
61 CB3 HB21 C H sing 1.09 N N
62 CB3 HB31 C H sing 1.09 N N
63 CG3 CD2 C C sing 1.53 N N
64 CG3 HG27 C H sing 1.09 N N
65 CG3 HG31 C H sing 1.09 N N
66 CD2 CE1 C C sing 1.53 N N
67 CD2 HD21 C H sing 1.09 N N
68 CD2 HD31 C H sing 1.09 N N
69 CE1 HE11 C H sing 1.09 N N
70 CE1 HE21 C H sing 1.09 N N
71 CE1 HE31 C H sing 1.09 N N
72 N4 CA4 N C sing 1.47 N N
73 N4 H7 N H sing 0.97 N N
74 CA4 C5 C C sing 1.51 N N
75 CA4 CB4 C C sing 1.53 N N
76 CA4 HA4 C H sing 1.09 N N
77 C5 O4 C O doub 1.21 N N
78 CB4 CG4 C C sing 1.53 N N
79 CB4 HB22 C H sing 1.09 N N
80 CB4 HB32 C H sing 1.09 N N
81 CG4 CD3 C C sing 1.51 N N
82 CG4 HG28 C H sing 1.09 N N
83 CG4 HG32 C H sing 1.09 N N
84 CD3 OE1 C O doub 1.21 N N
85 CD3 NE2 C N sing 1.35 N N
86 NE2 HE22 N H sing 0.97 N N
87 NE2 HE23 N H sing 0.97 N N
88 N5 CA5 N C sing 1.46 N N
89 N5 H8 N H sing 0.97 N N
90 CA5 C6 C C sing 1.51 N N
91 CA5 CB5 C C sing 1.53 N N
92 CA5 HA5 C H sing 1.09 N N
93 C6 O5 C O doub 1.21 N N
94 CB5 CG5 C C sing 1.53 N N
95 CB5 HB23 C H sing 1.09 N N
96 CB5 HB33 C H sing 1.09 N N
97 CG5 CD4 C C sing 1.53 N N
98 CG5 HG29 C H sing 1.09 N N
99 CG5 HG33 C H sing 1.09 N N
100 CD4 NE C N sing 1.46 N N
101 CD4 HD22 C H sing 1.09 N N
102 CD4 HD32 C H sing 1.09 N N
103 NE CZ N C sing 1.37 N N
104 NE HE N H sing 0.97 N N
105 CZ NH1 C N sing 1.33 N N
106 CZ NH2 C N doub 1.33 N N
107 NH1 HH11 N H sing 0.97 N N
108 NH1 HH12 N H sing 0.97 N N
109 NH2 HH21 N H sing 0.97 N N
110 NH2 HH22 N H sing 0.97 N N
111 N6 HN1 N H sing 0.97 N N
112 N6 HN2 N H sing 0.97 N N
113 C N C N sing 1.35 N N
114 C1 N1 C N sing 1.35 N N
115 C2 N2 C N sing 1.35 N N
116 C3 N3 C N sing 1.47 N N
117 C4 N4 C N sing 1.35 N N
118 C5 N5 C N sing 1.35 N N
119 C3 HC31 C H sing 1.09 N N
120 C3 HC32 C H sing 1.09 N N
121 C6 N6 C N sing 1.35 N N