Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 1R9    

Bonds between two atoms of the molecule

Total Number of Bonds: 49


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C13 C12 C C sing 1.53 N N
2 C13 C11 C C sing 1.53 N N
3 C12 C11 C C sing 1.53 N N
4 C11 N9 C N sing 1.47 N N
5 N9 C8 N C sing 1.35 N N
6 C8 O10 C O doub 1.22 N N
7 C8 C4 C C sing 1.48 N N
8 C5 C4 C C doub 1.4 N Y
9 C5 C6 C C sing 1.38 N Y
10 C4 C3 C C sing 1.4 N Y
11 C6 C1 C C doub 1.38 N Y
12 C3 C2 C C doub 1.39 N Y
13 C1 C2 C C sing 1.39 N Y
14 C1 C7 C C sing 1.51 N N
15 C2 N26 C N sing 1.4 N N
16 N26 C14 N C sing 1.35 N N
17 C14 O27 C O doub 1.22 N N
18 C14 C15 C C sing 1.47 N N
19 C16 C15 C C doub 1.37 N Y
20 C16 N17 C N sing 1.31 N Y
21 C15 S19 C S sing 1.76 N Y
22 N17 C18 N C doub 1.3 N Y
23 S19 C18 S C sing 1.71 N Y
24 C18 C20 C C sing 1.48 N N
25 CL1 C25 CL C sing 1.74 N N
26 C20 C25 C C doub 1.4 N Y
27 C20 C21 C C sing 1.4 N Y
28 C25 C24 C C sing 1.38 N Y
29 C21 C22 C C doub 1.38 N Y
30 C24 C23 C C doub 1.38 N Y
31 C22 C23 C C sing 1.38 N Y
32 C3 H1 C H sing 1.08 N N
33 C5 H2 C H sing 1.08 N N
34 C6 H3 C H sing 1.08 N N
35 C7 H4 C H sing 1.09 N N
36 C7 H5 C H sing 1.09 N N
37 C7 H6 C H sing 1.09 N N
38 N9 H7 N H sing 0.97 N N
39 C11 H8 C H sing 1.09 N N
40 C12 H9 C H sing 1.09 N N
41 C12 H10 C H sing 1.09 N N
42 C13 H11 C H sing 1.09 N N
43 C13 H12 C H sing 1.09 N N
44 C16 H13 C H sing 1.08 N N
45 C21 H14 C H sing 1.08 N N
46 C22 H15 C H sing 1.08 N N
47 C23 H16 C H sing 1.08 N N
48 C24 H17 C H sing 1.08 N N
49 N26 H18 N H sing 0.97 N N