Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : ZCZ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 -3.501 0.315 0.674
2 C2 C C2 S N N 0 -2.912 -1.001 0.157
3 C2M C C2M N N N 0 -4.263 -1.654 -1.712
4 C3 C C3 S N N 0 -1.43 -1.071 0.537
5 C4 C C4 S N N 0 -0.709 0.153 -0.036
6 C5 C C5 R N N 0 -1.383 1.424 0.488
7 C6 C C6 N N N 0 -0.707 2.651 -0.126
8 C7 C C7 N N N 0 1.627 0.771 -0.354
9 C8 C C8 R N N 0 3.07 0.752 0.078
10 C9 C C9 N N N 0 3.603 -0.681 0.015
11 C10 C C10 N N N 0 5.028 -0.72 0.57
12 O1 O O1 N N Y 0 -3.417 0.347 2.1
13 O2 O O2 N N N 0 -3.044 -1.058 -1.265
14 O3 O O3 N N N 0 -0.854 -2.262 -0.004
15 N4 N N4 N N N 0 0.695 0.135 0.384
16 O5 O O5 N N N 0 -2.766 1.411 0.127
17 O7 O O7 N N N 0 1.303 1.357 -1.365
18 O8 O O8 N N N 0 3.839 1.584 -0.794
19 O10 O O10 N N N 0 5.526 -2.058 0.512
20 H1 H H1 N N N 0 -4.545 0.389 0.369
21 HO1 H HO1 N N Y 0 -3.773 1.154 2.496
22 H2 H H2 N N N 0 -3.444 -1.839 0.606
23 H2M1 H H2M1 N N N 0 -4.324 -2.678 -1.342
24 H2M2 H H2M2 N N N 0 -5.109 -1.08 -1.333
25 H2M3 H H2M3 N N N 0 -4.287 -1.66 -2.802
26 H3 H H3 N N N 0 -1.332 -1.079 1.622
27 HO3 H HO3 N N Y 0 -1.267 -3.077 0.31
28 H4 H H4 N N N 0 -0.764 0.132 -1.124
29 H4N1 H H4N1 N N N 0 0.953 -0.334 1.192
30 H5 H H5 N N N 0 -1.291 1.463 1.574
31 H61 H H61 N N N 0 -0.799 2.611 -1.212
32 H62 H H62 N N N 0 -1.187 3.556 0.247
33 H63 H H63 N N N 0 0.348 2.66 0.148
34 H8 H H8 N N N 0 3.149 1.125 1.099
35 H8O H H8O N N N 0 3.814 1.311 -1.721
36 H91 H H91 N N N 0 3.607 -1.022 -1.02
37 H92 H H92 N N N 0 2.963 -1.333 0.61
38 H101 H H101 N N N 0 5.024 -0.379 1.605
39 H102 H H102 N N N 0 5.668 -0.068 -0.025
40 H10O H H10O N N N 0 6.427 -2.158 0.848