Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YNY

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 73


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C20 C C1 N Y N 0 0.24 2.606 -1.098
2 C21 C C2 N N N 0 -0.378 -0.175 0.396
3 C23 C C3 N N N 0 0.3 -2.53 -0.075
4 C25 C C4 N Y N 0 1.722 -2.169 -0.001
5 C18 C C5 N Y N 0 1.917 2.322 -2.422
6 C16 C C6 N Y N 0 1.191 3.625 -0.867
7 C10 C C7 N N N 0 -1.926 1.569 -0.557
8 C26 C C8 N Y N 0 2.761 -2.992 -0.305
9 C27 C C9 N Y N 0 3.96 -2.267 -0.105
10 C14 C C10 N Y N 0 0.912 4.589 0.117
11 C28 C C11 N Y N 0 5.317 -2.594 -0.256
12 N17 N N1 N Y N 0 2.207 3.395 -1.716
13 O24 O O1 N N N 0 -0.025 -3.681 -0.296
14 C01 C C12 N N N 0 -10.025 0.49 0.358
15 C03 C C13 N N N 0 -7.637 0.436 0.391
16 C05 C C14 N Y N 0 -6.344 -0.25 0.272
17 C06 C C15 N Y N 0 -5.125 0.335 0.415
18 C07 C C16 N Y N 0 -4.141 -0.666 0.225
19 C08 C C17 N Y N 0 -2.739 -0.65 0.254
20 C09 C C18 R N N 0 -1.765 0.479 0.505
21 C12 C C19 N Y N 0 -1.11 3.564 0.574
22 C29 C C20 N Y N 0 6.283 -1.653 0.022
23 C31 C C21 N N N 0 7.9 -3.294 -0.57
24 C32 C C22 N Y N 0 5.92 -0.375 0.454
25 C34 C C23 N N N 0 7.383 0.586 2.065
26 C35 C C24 N Y N 0 4.586 -0.038 0.608
27 C37 C C25 N N N 0 3.956 2.179 0.019
28 C38 C C26 N Y N 0 3.595 -0.979 0.33
29 C40 C C27 N Y N 0 -2.025 -1.807 0.029
30 C41 C C28 N Y N 0 -2.714 -3.002 -0.23
31 C42 C C29 N Y N 0 -4.09 -3.035 -0.262
32 C44 C C30 N Y N 0 -4.823 -1.868 -0.036
33 N11 N N2 N Y N 0 -0.914 2.607 -0.349
34 N13 N N3 N Y N 0 -0.236 4.511 0.796
35 N15 N N4 N N N 0 1.807 5.596 0.376
36 N19 N N5 N Y N 0 0.733 1.842 -2.061
37 N22 N N6 N N N 0 -0.645 -1.585 0.101
38 N39 N N7 N Y N 0 2.218 -0.937 0.382
39 N45 N N8 N Y N 0 -6.172 -1.593 -0.004
40 O02 O O2 N N N 0 -8.785 -0.253 0.227
41 O04 O O3 N N N 0 -7.674 1.626 0.637
42 O30 O O4 N N N 0 7.597 -1.97 -0.125
43 O33 O O5 N N N 0 6.884 0.545 0.726
44 O36 O O6 N N N 0 4.242 1.209 1.029
45 O43 O O7 N N N 0 -4.736 -4.204 -0.516
46 H211 H H1 N N N 0 0.193 0.28 -0.413
47 H212 H H2 N N N 0 0.16 -0.08 1.339
48 H181 H H3 N N N 0 2.549 1.898 -3.189
49 H101 H H4 N N N 0 -1.801 1.132 -1.548
50 H102 H H5 N N N 0 -2.92 2.009 -0.478
51 H261 H H6 N N N 0 2.685 -4.016 -0.639
52 H281 H H7 N N N 0 5.602 -3.581 -0.59
53 H013 H H9 N N N 0 -10.053 1.286 -0.386
54 H011 H H10 N N N 0 -10.869 -0.182 0.203
55 H012 H H11 N N N 0 -10.084 0.924 1.357
56 H061 H H12 N N N 0 -4.94 1.376 0.634
57 H091 H H13 N N N 0 -1.912 0.896 1.502
58 H121 H H14 N N N 0 -2.021 3.55 1.153
59 H311 H H15 N N N 0 8.981 -3.414 -0.644
60 H312 H H16 N N N 0 7.502 -4.016 0.143
61 H313 H H17 N N N 0 7.448 -3.461 -1.548
62 H343 H H18 N N N 0 6.565 0.807 2.751
63 H341 H H19 N N N 0 7.819 -0.38 2.319
64 H342 H H20 N N N 0 8.145 1.361 2.146
65 H372 H H21 N N N 0 4.801 2.252 -0.665
66 H371 H H22 N N N 0 3.066 1.876 -0.533
67 H373 H H23 N N N 0 3.781 3.149 0.486
68 H411 H H24 N N N 0 -2.156 -3.91 -0.406
69 H151 H H25 N N N 0 2.639 5.646 -0.121
70 H152 H H26 N N N 0 1.608 6.258 1.057
71 H391 H H28 N N N 0 1.685 -0.171 0.646
72 H451 H H29 N N N 0 -6.884 -2.235 -0.149
73 H431 H H30 N N N 0 -5.007 -4.684 0.279