Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YCM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 21


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 3.035 -1.472 -0.44
2 CA C CA R N N 0 1.665 -1.164 -0.766
3 CB C CB N N N 0 1.076 -0.107 0.172
4 SG S SG N N N 0 1.832 1.542 -0.014
5 CD C CD N N N 0 0.824 2.422 1.2
6 CE C CE N N N 0 1.261 3.865 1.246
7 OZ1 O OZ1 N N N 0 1.227 4.6 0.261
8 NZ2 N NZ2 N N N 0 1.707 4.267 2.484
9 C C C N N N 0 1.5 -0.794 -2.231
10 O O O N N N 0 2.436 -0.664 -3.01
11 OXT O OXT N N Y 0 0.208 -0.605 -2.593
12 H H H N N N 0 3.758 -1.236 -1.098
13 H2 H HN2 N N Y 0 3.225 -2.09 0.331
14 HA H HA N N N 0 1.117 -2.104 -0.627
15 HB2 H 1HB N N N 0 1.217 -0.414 1.214
16 HB3 H 2HB N N N 0 0.0 0.0 0.0
17 HD2 H 1HD N N N 0 -0.23 2.382 0.908
18 HD3 H 2HD N N N 0 0.926 1.938 2.175
19 HZ21 H 1HZ N N N 0 2.021 5.225 2.601
20 HZ22 H 2HZ N N N 0 1.735 3.644 3.285
21 HXT H HXT N N Y 0 0.125 -0.356 -3.538