Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YBD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 42


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C12 C C1 N N N 0 -3.627 1.839 1.664
2 C11 C C2 R N N 0 -3.264 1.302 0.278
3 C16 C C3 N Y N 0 -3.996 -2.28 0.399
4 C14 C C4 N Y N 0 -3.841 -0.08 0.108
5 C25 C C5 N Y N 0 5.784 -1.066 0.021
6 C23 C C6 N Y N 0 4.881 1.09 -0.501
7 C24 C C7 N Y N 0 5.966 0.249 -0.371
8 C17 C C8 N Y N 0 -5.056 -2.157 -0.406
9 C18 C C9 N N N 0 -5.959 -3.275 -0.859
10 C02 C C10 N Y N 0 4.51 -1.546 0.285
11 C03 C C11 N Y N 0 3.416 -0.713 0.158
12 C04 C C12 N Y N 0 3.596 0.614 -0.236
13 C05 C C13 N Y N 0 2.429 1.511 -0.374
14 C06 C C14 N Y N 0 2.47 2.834 -0.759
15 C07 C C15 N Y N 0 1.162 3.314 -0.761
16 C08 C C16 N Y N 0 0.339 2.275 -0.376
17 C09 C C17 N N N 0 -1.119 2.335 -0.242
18 F01 F F1 N N N 0 4.339 -2.831 0.667
19 N10 N N1 N N N 0 -1.806 1.242 0.144
20 N13 N N2 N N N 0 -2.965 3.134 1.876
21 N15 N N3 N Y N 0 -3.369 -1.15 0.653
22 N22 N N4 N Y N 0 1.128 1.17 -0.146
23 O19 O O1 N N N 0 -7.034 -3.426 0.07
24 O21 O O2 N N N 0 -1.71 3.373 -0.479
25 S20 S S1 N Y N 0 -5.211 -0.457 -0.842
26 CL26 CL CL1 N N N 0 7.155 -2.121 0.175
27 H1 H H1 N N N 0 -4.707 1.968 1.733
28 H2 H H2 N N N 0 -3.296 1.133 2.426
29 H3 H H3 N N N 0 -3.672 1.963 -0.486
30 H4 H H4 N N N 0 -3.682 -3.228 0.81
31 H5 H H5 N N N 0 5.026 2.116 -0.806
32 H6 H H6 N N N 0 6.961 0.617 -0.575
33 H7 H H7 N N N 0 -6.361 -3.04 -1.845
34 H8 H H8 N N N 0 -5.39 -4.204 -0.911
35 H9 H H9 N N N 0 2.424 -1.087 0.364
36 H10 H H10 N N N 0 3.356 3.397 -1.013
37 H11 H H11 N N N 0 0.85 4.316 -1.018
38 H12 H H12 N N N 0 -1.335 0.415 0.334
39 H13 H H13 N N N 0 -3.205 3.787 1.145
40 H14 H H14 N N N 0 -3.189 3.51 2.785
41 H16 H H16 N N N 0 0.812 0.297 0.133
42 H17 H H17 N N N 0 -7.657 -4.13 -0.16