Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : Y8H

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 54


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 5.886 -1.566 -2.183
2 N3 N N2 N Y N 0 7.522 -2.225 -0.428
3 C4 C C1 N Y N 0 4.774 -0.899 -2.402
4 C5 C C2 N Y N 0 6.549 -1.211 1.291
5 C6 C C3 N Y N 0 7.593 -1.968 0.917
6 C7 C C4 N N N 0 4.694 1.488 1.366
7 C8 C C5 R N N 0 2.592 0.902 0.315
8 C10 C C6 N N N 0 1.561 2.61 -1.22
9 C13 C C7 N N N 0 1.718 1.334 1.518
10 C15 C C8 N N N 0 -1.926 0.756 0.613
11 C17 C C9 N Y N 0 -4.648 0.587 -0.126
12 C20 C C10 N Y N 0 -6.041 -1.801 0.05
13 C21 C C11 N Y N 0 -4.71 -1.753 0.42
14 C1 C C12 N Y N 0 4.568 -0.268 -0.192
15 C11 C C13 N N N 0 0.927 3.602 -0.276
16 C12 C C14 N N N 0 -0.106 2.896 0.62
17 C14 C C15 N N N 0 -0.506 0.542 1.071
18 C16 C C16 N Y N 0 -4.009 -0.558 0.333
19 C18 C C17 N Y N 0 -5.981 0.535 -0.489
20 C19 C C18 N Y N 0 -6.677 -0.658 -0.401
21 C2 C C19 N Y N 0 5.751 -0.968 0.091
22 C3 C C20 N Y N 0 6.411 -1.63 -0.961
23 C9 C C21 N N N 0 2.826 2.043 -0.583
24 N2 N N3 N Y N 0 4.122 -0.263 -1.445
25 N4 N N4 N N N 0 3.882 0.398 0.807
26 N5 N N5 N N N 0 0.363 1.572 1.072
27 N6 N N6 N N N 0 -2.664 -0.506 0.706
28 O1 O O1 N N N 0 -0.147 -0.556 1.438
29 CL1 CL CL1 N N N 0 -6.782 1.967 -1.055
30 CL2 CL CL2 N N N 0 -6.918 -3.296 0.158
31 H1 H H1 N N N 0 8.165 -2.751 -0.928
32 H2 H H2 N N N 0 4.378 -0.869 -3.407
33 H3 H H3 N N N 0 6.338 -0.851 2.288
34 H4 H H4 N N N 0 8.372 -2.321 1.576
35 H5 H H5 N N N 0 4.159 1.95 2.196
36 H6 H H6 N N N 0 5.642 1.088 1.723
37 H7 H H7 N N N 0 4.881 2.234 0.594
38 H8 H H8 N N N 0 2.082 0.11 -0.233
39 H9 H H9 N N N 0 0.86 1.8 -1.42
40 H10 H H10 N N N 0 1.816 3.109 -2.155
41 H11 H H11 N N N 0 1.72 0.545 2.27
42 H12 H H12 N N N 0 2.123 2.249 1.951
43 H13 H H13 N N N 0 -2.404 1.503 1.247
44 H14 H H14 N N N 0 -1.926 1.102 -0.42
45 H15 H H15 N N N 0 -4.106 1.518 -0.194
46 H16 H H16 N N N 0 -4.215 -2.646 0.773
47 H17 H H17 N N N 0 1.7 4.051 0.348
48 H18 H H18 N N N 0 0.43 4.383 -0.853
49 H19 H H19 N N N 0 -0.304 3.519 1.492
50 H20 H H20 N N N 0 -1.033 2.768 0.059
51 H21 H H21 N N N 0 -7.717 -0.698 -0.69
52 H22 H H22 N N N 0 3.313 2.836 -0.016
53 H23 H H23 N N N 0 3.501 1.726 -1.378
54 H24 H H24 N N N 0 -2.219 -1.306 1.026