Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : Y5L

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C02 C C1 N Y N 0 1.98 -2.039 0.336
2 C04 C C2 N Y N 0 3.487 -0.352 -0.095
3 C05 C C3 N Y N 0 2.441 0.537 -0.232
4 C06 C C4 N N N 0 2.973 1.915 -0.548
5 C07 C C5 N N N 0 4.429 1.688 -1.011
6 C08 C C6 N N N 0 4.8 0.367 -0.311
7 C09 C C7 N Y N 0 1.138 0.063 -0.073
8 C11 C C8 N Y N 0 -1.261 0.431 -0.197
9 C12 C C9 N Y N 0 -1.551 -0.841 -0.658
10 C13 C C10 N Y N 0 -2.858 -1.294 -0.647
11 C14 C C11 N Y N 0 -3.875 -0.476 -0.176
12 C16 C C12 N N N 0 -5.385 -2.249 -0.662
13 C17 C C13 N Y N 0 -3.588 0.799 0.288
14 C18 C C14 N Y N 0 -2.281 1.257 0.28
15 C20 C C15 N N N 0 -0.769 3.091 0.496
16 C21 C C16 N N N 0 0.25 2.37 -0.348
17 N03 N N1 N Y N 0 3.222 -1.621 0.187
18 N10 N N2 N N N 0 0.056 0.92 -0.202
19 N19 N N3 N N N 0 -1.968 2.536 0.753
20 N23 N N4 N Y N 0 0.951 -1.224 0.208
21 O15 O O1 N N N 0 -5.159 -0.926 -0.17
22 O22 O O2 N N N 0 -0.504 4.183 0.952
23 CL01 CL CL1 N N N 0 1.691 -3.711 0.704
24 H1 H H1 N N N 0 2.39 2.377 -1.345
25 H2 H H2 N N N 0 2.953 2.537 0.347
26 H3 H H3 N N N 0 4.478 1.572 -2.094
27 H4 H H4 N N N 0 5.072 2.502 -0.678
28 H5 H H5 N N N 0 5.276 0.568 0.649
29 H6 H H6 N N N 0 5.461 -0.225 -0.945
30 H7 H H7 N N N 0 -0.76 -1.477 -1.026
31 H8 H H8 N N N 0 -3.088 -2.287 -1.005
32 H9 H H9 N N N 0 -5.057 -2.311 -1.7
33 H10 H H10 N N N 0 -4.821 -2.962 -0.06
34 H11 H H11 N N N 0 -6.448 -2.482 -0.602
35 H12 H H12 N N N 0 -4.382 1.434 0.654
36 H13 H H13 N N N 0 0.123 2.651 -1.393
37 H14 H H14 N N N 0 1.253 2.639 -0.017
38 H15 H H15 N N N 0 -2.623 3.028 1.273