Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : WD8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 31


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C7 C C1 N Y N 0 1.451 0.79 0.171
2 C8 C C2 N Y N 0 2.683 1.494 -0.095
3 C9 C C3 N Y N 0 3.717 0.682 -0.283
4 O1 O O1 N N N 0 -1.27 -2.64 -0.616
5 C1 C C4 N N N 0 -2.221 1.729 -0.002
6 C5 C C5 N N N 0 -1.593 -3.731 0.286
7 C6 C C6 N N N 0 0.166 1.466 0.413
8 C4 C C7 N N N 0 -1.247 -1.404 -0.094
9 C3 C C8 N N N 0 -0.919 -0.222 -0.969
10 C2 C C9 N N N 0 -3.285 0.78 0.551
11 O2 O O2 N N N 0 0.119 2.441 1.139
12 C10 C C10 N Y N 0 1.598 -0.562 0.169
13 S S S1 N Y N 0 3.217 -0.995 -0.141
14 N N N1 N N N 0 -0.959 1.004 -0.169
15 C C C11 N N N 0 -2.678 2.276 -1.355
16 O O O3 N N N 0 -1.488 -1.239 1.079
17 H1 H H1 N N N 0 2.757 2.571 -0.137
18 H2 H H2 N N N 0 4.724 1.008 -0.495
19 H3 H H3 N N N 0 -2.075 2.556 0.694
20 H4 H H4 N N N 0 -0.859 -3.767 1.091
21 H5 H H5 N N N 0 -2.586 -3.572 0.707
22 H6 H H6 N N N 0 -1.577 -4.673 -0.262
23 H7 H H7 N N N 0 0.078 -0.348 -1.392
24 H8 H H8 N N N 0 -1.649 -0.154 -1.776
25 H9 H H9 N N N 0 -3.431 -0.047 -0.144
26 H10 H H10 N N N 0 -2.959 0.39 1.516
27 H11 H H11 N N N 0 -4.224 1.319 0.676
28 H12 H H12 N N N 0 0.798 -1.266 0.343
29 H13 H H13 N N N 0 -3.617 2.815 -1.231
30 H14 H H14 N N N 0 -1.92 2.953 -1.749
31 H15 H H15 N N N 0 -2.824 1.449 -2.051