Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : W8D

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 29


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 R N N 0 -2.137 -0.491 -0.109
2 C13 C C2 N N N 0 -4.506 0.079 -0.045
3 C15 C C3 N Y N 0 0.332 1.407 0.757
4 C02 C C4 N Y N 0 2.491 1.194 -0.045
5 C03 C C5 N Y N 0 2.329 -0.198 -0.144
6 C05 C C6 N Y N 0 2.409 -2.334 -0.412
7 C07 C C7 N Y N 0 1.09 -0.759 0.24
8 C09 C C8 N N N 0 -1.198 -0.455 1.098
9 C12 C C9 N N N 0 -3.705 0.898 -1.095
10 C14 C C10 N N N 0 -3.509 -1.052 0.311
11 N01 N N1 N N N 0 3.676 1.783 -0.406
12 N04 N N2 N Y N 0 3.103 -1.223 -0.538
13 N06 N N3 N Y N 0 1.195 -2.066 0.055
14 N08 N N4 N Y N 0 0.101 0.086 0.691
15 N16 N N5 N Y N 0 1.475 1.937 0.405
16 O11 O O1 N N N 0 -2.349 0.842 -0.604
17 H101 H H1 N N N 0 -1.707 -1.113 -0.895
18 H132 H H2 N N N 0 -4.733 0.686 0.831
19 H131 H H3 N N N 0 -5.418 -0.328 -0.482
20 H151 H H4 N N N 0 -0.456 2.056 1.109
21 H051 H H5 N N N 0 2.774 -3.321 -0.655
22 H092 H H6 N N N 0 -1.628 0.178 1.874
23 H091 H H7 N N N 0 -1.066 -1.465 1.486
24 H121 H H8 N N N 0 -3.775 0.434 -2.079
25 H122 H H9 N N N 0 -4.06 1.928 -1.13
26 H141 H H10 N N N 0 -3.741 -1.956 -0.253
27 H142 H H11 N N N 0 -3.527 -1.253 1.382
28 H011 H H12 N N N 0 4.409 1.238 -0.732
29 H012 H H13 N N N 0 3.781 2.745 -0.336