Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : VQI

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 54


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -2.275 4.287 -0.599
2 C2 C C2 N Y N 0 -2.668 2.882 -0.219
3 C3 C C3 N Y N 0 -1.94 1.809 -0.691
4 C4 C C4 N Y N 0 -2.295 0.513 -0.346
5 C5 C C5 N Y N 0 -3.379 0.295 0.478
6 C6 C C6 N Y N 0 -4.114 1.37 0.952
7 C7 C C7 N Y N 0 -3.758 2.665 0.61
8 O8 O O8 N N N 0 -4.478 3.717 1.081
9 C9 C C9 N N N 0 -3.794 -1.095 0.888
10 C10 C C10 N N N 0 -3.156 -2.126 -0.043
11 N11 N N11 N N N 0 -1.713 -1.849 -0.127
12 C12 C C12 R N N 0 -1.475 -0.624 -0.897
13 C13 C C13 N Y N 0 -0.013 -0.265 -0.82
14 C14 C C14 N Y N 0 0.643 0.193 -1.95
15 C15 C C15 N Y N 0 1.981 0.523 -1.888
16 C16 C C16 N Y N 0 2.674 0.394 -0.68
17 C17 C C17 N Y N 0 2.004 -0.07 0.456
18 C18 C C18 N Y N 0 0.665 -0.391 0.38
19 C19 C C19 N N N 0 4.102 0.743 -0.606
20 C20 C C20 N N N 0 4.767 0.617 0.561
21 C21 C C21 N N N 0 6.186 0.964 0.634
22 O22 O O22 N N N 0 6.766 1.367 -0.356
23 O23 O O23 N N N 0 6.852 0.839 1.801
24 C24 C C24 N N N 0 -0.992 -2.987 -0.712
25 C25 C C25 N N N 0 -1.078 -4.187 0.234
26 C26 C C26 N N N 0 -0.435 -5.406 -0.429
27 C27 C C27 N N N 0 -0.338 -3.864 1.534
28 H11C H H11C N N N 0 -2.792 4.573 -1.515
29 H12C H H12C N N N 0 -2.552 4.971 0.204
30 H13C H H13C N N N 0 -1.198 4.332 -0.76
31 H3 H H3 N N N 0 -1.089 1.979 -1.333
32 H12 H H12 N N N 0 -1.749 -0.794 -1.938
33 H6 H H6 N N N 0 -4.965 1.198 1.594
34 H91C H H91C N N N 0 -3.47 -1.281 1.912
35 H92C H H92C N N N 0 -4.879 -1.18 0.832
36 H8 H H8 N N N 0 -5.215 3.977 0.511
37 H101 H H101 N N N 0 -3.314 -3.128 0.357
38 H102 H H102 N N N 0 -3.602 -2.05 -1.034
39 H241 H H241 N N N 0 -1.441 -3.248 -1.671
40 H242 H H242 N N N 0 0.054 -2.717 -0.862
41 H14 H H14 N N N 0 0.106 0.292 -2.881
42 H18 H H18 N N N 0 0.145 -0.744 1.258
43 H15 H H15 N N N 0 2.491 0.88 -2.77
44 H17 H H17 N N N 0 2.533 -0.172 1.392
45 H19 H H19 N N N 0 4.617 1.1 -1.486
46 H20 H H20 N N N 0 4.252 0.26 1.44
47 H23 H H23 N N N 0 7.784 1.092 1.751
48 H25 H H25 N N N 0 -2.123 -4.401 0.454
49 H261 H H261 N N N 0 0.611 -5.192 -0.649
50 H262 H H262 N N N 0 -0.496 -6.261 0.245
51 H263 H H263 N N N 0 -0.962 -5.636 -1.355
52 H273 H H273 N N N 0 -0.796 -2.995 2.007
53 H271 H H271 N N N 0 -0.4 -4.719 2.208
54 H272 H H272 N N N 0 0.707 -3.649 1.314