Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VGJ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 62


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O1 O O1 N N N 0 9.719 -0.432 -0.308
2 C15 C C15 N N N 0 8.504 0.004 0.059
3 O2 O O2 N N N 0 8.4 0.978 0.767
4 C14 C C14 N N N 0 7.269 -0.72 -0.413
5 C13 C C13 R N N 0 6.026 -0.024 0.144
6 C16 C C16 N N N 0 6.011 -0.148 1.669
7 C12 C C12 N N N 0 4.771 -0.682 -0.434
8 C11 C C11 N N N 0 3.533 0.092 0.024
9 C10 C C10 N N N 0 2.278 -0.566 -0.554
10 C9 C C9 S N N 0 1.04 0.207 -0.097
11 C17 C C17 N N N 0 1.069 1.616 -0.693
12 C8 C C8 N N N 0 -0.22 -0.521 -0.57
13 C7 C C7 N N N 0 -1.457 0.183 -0.008
14 C6 C C6 N N N 0 -2.717 -0.545 -0.481
15 C5 C C5 S N N 0 -3.954 0.158 0.081
16 C18 C C18 N N N 0 -4.053 1.566 -0.511
17 C4 C C4 N N N 0 -5.206 -0.64 -0.288
18 C3 C C3 N N N 0 -6.429 -0.006 0.378
19 C2 C C2 N N N 0 -7.681 -0.804 0.009
20 C1 C C1 N N N 0 -8.904 -0.17 0.674
21 C19 C C19 N N N 0 -9.131 1.229 0.098
22 C20 C C20 N N N 0 -10.136 -1.038 0.408
23 H1 H H1 N N N 0 10.481 0.065 0.019
24 H141 H H141 N N N 0 7.235 -0.709 -1.502
25 H142 H H142 N N N 0 7.296 -1.751 -0.061
26 H13 H H13 N N N 0 6.044 1.03 -0.134
27 H161 H H161 N N N 0 5.993 -1.202 1.947
28 H162 H H162 N N N 0 6.905 0.32 2.08
29 H163 H H163 N N N 0 5.125 0.348 2.066
30 H121 H H121 N N N 0 4.824 -0.672 -1.522
31 H122 H H122 N N N 0 4.707 -1.712 -0.083
32 H111 H H111 N N N 0 3.48 0.082 1.112
33 H112 H H112 N N N 0 3.598 1.122 -0.327
34 H101 H H101 N N N 0 2.331 -0.556 -1.643
35 H102 H H102 N N N 0 2.214 -1.596 -0.203
36 H9 H H9 N N N 0 1.034 0.273 0.992
37 H171 H H171 N N N 0 0.187 2.167 -0.367
38 H172 H H172 N N N 0 1.967 2.135 -0.356
39 H173 H H173 N N N 0 1.075 1.55 -1.781
40 H81C H H81C N N N 0 -0.259 -0.509 -1.659
41 H82C H H82C N N N 0 -0.197 -1.552 -0.218
42 H71C H H71C N N N 0 -1.418 0.171 1.081
43 H72C H H72C N N N 0 -1.479 1.214 -0.359
44 H61C H H61C N N N 0 -2.755 -0.534 -1.57
45 H62C H H62C N N N 0 -2.694 -1.577 -0.129
46 H5 H H5 N N N 0 -3.872 0.225 1.166
47 H181 H H181 N N N 0 -4.934 2.067 -0.111
48 H182 H H182 N N N 0 -3.161 2.134 -0.248
49 H183 H H183 N N N 0 -4.135 1.499 -1.596
50 H41C H H41C N N N 0 -5.336 -0.632 -1.37
51 H42C H H42C N N N 0 -5.096 -1.668 0.057
52 H31C H H31C N N N 0 -6.299 -0.014 1.46
53 H32C H H32C N N N 0 -6.538 1.022 0.033
54 H21C H H21C N N N 0 -7.811 -0.796 -1.074
55 H22C H H22C N N N 0 -7.571 -1.832 0.354
56 HA H HA N N N 0 -8.736 -0.098 1.749
57 H191 H H191 N N N 0 -9.299 1.156 -0.977
58 H192 H H192 N N N 0 -10.003 1.68 0.572
59 H193 H H193 N N N 0 -8.254 1.846 0.287
60 H201 H H201 N N N 0 -9.974 -2.034 0.819
61 H202 H H202 N N N 0 -11.008 -0.586 0.883
62 H203 H H203 N N N 0 -10.304 -1.11 -0.666