Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VFM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 25


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C13 C C1 N N N 0 5.453 0.98 -0.174
2 C15 C C2 N N N 0 4.858 -1.25 0.781
3 C05 C C3 N Y N 0 -1.632 0.102 0.062
4 C08 C C4 N Y N 0 0.776 -0.282 -0.123
5 C11 C C5 N N N 0 3.095 0.212 -0.169
6 C12 C C6 N N N 0 4.528 -0.231 -0.311
7 N04 N N1 N N N 0 -3.963 0.332 -1.383
8 N06 N N2 N Y N 0 -0.865 1.139 0.181
9 N07 N N3 N Y N 0 0.377 0.937 0.084
10 N10 N N4 N N N 0 2.099 -0.691 -0.255
11 O02 O O1 N N N 0 -3.769 -1.225 0.521
12 O03 O O2 N N N 0 -3.76 1.245 0.9
13 O14 O O3 N N N 0 2.838 1.382 0.024
14 S01 S S1 N N N 0 -3.391 0.094 0.153
15 S09 S S2 N Y N 0 -0.598 -1.301 -0.215
16 H1 H H1 N N N 0 6.49 0.66 -0.277
17 H2 H H2 N N N 0 5.218 1.707 -0.952
18 H3 H H3 N N N 0 5.31 1.438 0.805
19 H4 H H4 N N N 0 4.199 -2.113 0.684
20 H5 H H5 N N N 0 5.895 -1.571 0.678
21 H6 H H6 N N N 0 4.715 -0.793 1.76
22 H7 H H7 N N N 0 4.672 -0.688 -1.29
23 H8 H H8 N N N 0 -4.814 -0.049 -1.648
24 H9 H H9 N N N 0 -3.446 0.853 -2.018
25 H10 H H10 N N N 0 2.304 -1.626 -0.408