Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VDD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 21


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C7 C C1 N Y N 0 2.646 1.445 0.211
2 O1 O O1 N N N 0 -3.773 0.88 0.655
3 C1 C C2 S N N 0 -1.413 0.432 0.088
4 C5 C C3 N Y N 0 3.63 -0.725 0.024
5 C6 C C4 N Y N 0 3.773 0.651 0.146
6 C4 C C5 N Y N 0 2.353 -1.254 -0.03
7 C3 C C6 N Y N 0 1.261 -0.393 0.036
8 C2 C C7 N N N 0 -2.861 0.024 0.168
9 O O O2 N N N 0 -3.201 -1.073 -0.206
10 C C C8 N N N 0 -1.197 1.307 -1.149
11 S S S1 N N N 0 -0.373 -1.05 -0.031
12 N N N1 N Y N 0 1.439 0.914 0.157
13 H1 H H1 N N N 0 2.753 2.516 0.311
14 H2 H H2 N N N 0 -4.69 0.573 0.687
15 H3 H H3 N N N 0 -1.143 0.994 0.982
16 H4 H H4 N N N 0 4.496 -1.367 -0.029
17 H5 H H5 N N N 0 4.757 1.095 0.19
18 H6 H H6 N N N 0 2.205 -2.319 -0.125
19 H7 H H7 N N N 0 -0.149 1.602 -1.207
20 H8 H H8 N N N 0 -1.466 0.744 -2.043
21 H9 H H9 N N N 0 -1.822 2.197 -1.078