Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : URI

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 29


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -0.241 0.429 -1.029
2 C2 C C2 N N N 0 0.482 -0.634 -1.422
3 N3 N N3 N N N 0 0.743 -0.85 -2.725
4 C4 C C4 N N N 0 0.289 0.007 -3.661
5 C5 C C5 N N N 0 -0.468 1.134 -3.26
6 C6 C C6 N N N 0 -0.72 1.324 -1.947
7 O2 O O2 N N N 0 0.898 -1.416 -0.59
8 O4 O O4 N N N 0 0.529 -0.184 -4.839
9 C1' C C1* R N N 0 -0.513 0.636 0.394
10 C2' C C2* R N N 0 -1.204 -0.608 1.007
11 C3' C C3* S N N 0 -0.831 -0.481 2.508
12 C4' C C4* R N N 0 0.409 0.431 2.508
13 O2' O O2* N N N 0 -2.62 -0.546 0.828
14 O3' O O3* N N N 0 -1.901 0.117 3.24
15 O4' O O4* N N N 0 0.719 0.737 1.138
16 C5' C C5* N N N 0 1.589 -0.293 3.159
17 O5' O O5* N N N 0 2.736 0.558 3.148
18 H3 H H3 N N N 0 1.263 -1.624 -2.991
19 H5 H H5 N N N 0 -0.841 1.832 -3.995
20 H6 H H6 N N N 0 -1.296 2.178 -1.623
21 H1' H H1* N N N 0 -1.125 1.526 0.542
22 H2' H H2* N N N 0 -0.799 -1.527 0.581
23 H3' H H3* N N N 0 -0.585 -1.458 2.924
24 H4' H H4* N N N 0 0.193 1.35 3.053
25 HO2' H *HO2 N N N 0 -2.988 -1.345 1.229
26 HO3' H *HO3 N N N 0 -1.614 0.17 4.162
27 H5'1 H 1H5* N N N 0 1.808 -1.204 2.602
28 H5'2 H 2H5* N N N 0 1.336 -0.548 4.188
29 HO5' H *HO5 N N N 0 3.455 0.064 3.567