Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : UMF

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 33


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 -0.187 0.5 -2.247
2 C2 C C2 N Y N 0 0.203 -0.702 -2.707
3 O2 O O2 N N N 0 0.722 -1.495 -1.947
4 N3 N N3 N Y N 0 0.017 -1.042 -3.996
5 C4 C C4 N Y N 0 -0.557 -0.173 -4.853
6 O4 O O4 N N N 0 -0.721 -0.479 -6.02
7 C5 C C5 N Y N 0 -0.968 1.096 -4.382
8 C6 C C6 N Y N 0 -0.774 1.409 -3.083
9 C5' C C5* N N N 0 2.691 -0.291 1.289
10 O5' O O5* N N N 0 3.901 0.329 0.85
11 C4' C C4* R N N 0 1.5 0.598 0.928
12 O4' O O4* N N N 0 1.423 0.756 -0.498
13 C3' C C3* R N N 0 0.19 -0.067 1.39
14 O3' O O3* N N N 0 -0.497 0.764 2.327
15 C2' C C2* R N N 0 -0.637 -0.214 0.086
16 F2' F F2* N N N 0 -1.983 0.091 0.312
17 C1' C C1* R N N 0 0.022 0.84 -0.837
18 O3P O O3P N N N 0 -1.491 0.763 4.761
19 P P P N N N 0 -0.718 -0.116 3.657
20 O1P O O1P N N N 0 -1.594 -1.418 3.298
21 O2P O O2P N N N 0 0.595 -0.537 4.193
22 H3 H H3 N N N 0 0.301 -1.914 -4.311
23 H5 H H5 N N N 0 -1.431 1.805 -5.053
24 H6 H H6 N N N 0 -1.082 2.374 -2.706
25 H5' H H5* N N N 0 4.625 -0.262 1.097
26 H5'1 H 1H5* N N N 0 2.582 -1.26 0.8
27 H5'2 H 2H5* N N N 0 2.726 -0.432 2.369
28 H4' H H4* N N N 0 1.609 1.573 1.404
29 H3' H H3* N N N 0 0.392 -1.045 1.826
30 H2' H H2* N N N 0 -0.532 -1.216 -0.33
31 H1' H H1* N N N 0 -0.365 1.835 -0.622
32 H3P H H3P N N N 0 -1.603 0.2 5.539
33 H1P H H1P N N N 0 -2.439 -1.1 2.953