Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : UFP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 33


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 0.363 0.246 2.234
2 C2 C C2 N N N 0 -0.307 -0.92 2.249
3 N3 N N3 N N N 0 -1.058 -1.273 3.308
4 C4 C C4 N N N 0 -1.159 -0.453 4.374
5 C5 C C5 N N N 0 -0.463 0.781 4.37
6 C6 C C6 N N N 0 0.287 1.108 3.296
7 O2 O O2 N N N 0 -0.226 -1.67 1.295
8 O4 O O4 N N N 0 -1.843 -0.77 5.331
9 F5 F F5 N N N 0 -0.549 1.619 5.427
10 C1' C C1* R N N 0 1.177 0.6 1.068
11 C2' C C2* N N N 0 2.285 -0.452 0.847
12 C3' C C3* S N N 0 2.389 -0.571 -0.69
13 C4' C C4* R N N 0 1.33 0.421 -1.218
14 O3' O O3* N N N 0 3.694 -0.195 -1.134
15 O4' O O4* N N N 0 0.38 0.556 -0.135
16 C5' C C5* N N N 0 0.64 -0.136 -2.464
17 O5' O O5* N N N 0 -0.381 0.767 -2.889
18 P P P N N N 0 -1.061 0.12 -4.197
19 O1P O O1P N N N 0 -1.636 -1.199 -3.853
20 O2P O O2P N N N 0 -2.228 1.091 -4.731
21 O3P O O3P N N Y 0 0.052 -0.062 -5.345
22 HN3 H HN3 N N N 0 -1.531 -2.12 3.304
23 H6 H H6 N N N 0 0.825 2.044 3.275
24 H1' H H1* N N N 0 1.614 1.59 1.198
25 H2'1 H 1H2* N N N 0 1.997 -1.408 1.285
26 H2'2 H 2H2* N N N 0 3.229 -0.107 1.267
27 H3' H H3* N N N 0 2.154 -1.586 -1.011
28 H4' H H4* N N N 0 1.792 1.384 -1.439
29 HO3' H *HO3 N N N 0 4.313 -0.83 -0.75
30 H5'1 H 1H5* N N N 0 1.373 -0.256 -3.262
31 H5'2 H 2H5* N N N 0 0.196 -1.104 -2.231
32 HOP2 H 2HOP N N N 0 -2.608 0.668 -5.513
33 HOP3 H 3HOP N N N 0 0.4 0.818 -5.54