Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : UFD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 66


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C13 C C1 N Y N 0 -1.897 3.251 -2.054
2 C18 C C2 N N N 0 3.94 -1.359 -0.687
3 C17 C C3 N N N 0 2.477 -1.505 -0.262
4 C16 C C4 N Y N 0 -2.374 2.305 0.5
5 C15 C C5 N Y N 0 -2.213 3.661 0.283
6 C19 C C6 N N N 0 4.657 -0.408 0.273
7 C20 C C7 N N N 0 3.977 0.961 0.239
8 C21 C C8 N Y N 0 6.098 -0.264 -0.147
9 C22 C C9 N N N 0 3.132 -1.121 2.119
10 C23 C C10 N N N 0 4.594 -0.975 1.693
11 C24 C C11 N Y N 0 6.95 0.551 0.576
12 C11 C C12 N N N 0 2.514 0.814 0.665
13 C12 C C13 N Y N 0 -2.063 1.896 -1.839
14 C27 C C14 N Y N 0 7.888 -0.812 -1.639
15 C1 C C15 N Y N 0 -4.399 0.138 1.266
16 C2 C C16 N Y N 0 -5.723 -0.128 1.62
17 N1 N N1 N Y N 0 -6.516 -0.828 0.827
18 C3 C C17 N Y N 0 -6.084 -1.305 -0.333
19 C4 C C18 N Y N 0 -4.762 -1.075 -0.75
20 C5 C C19 N Y N 0 -3.909 -0.327 0.078
21 N2 N N2 N Y N 0 -6.67 -2.045 -1.33
22 N3 N N3 N Y N 0 -5.691 -2.239 -2.315
23 N4 N N4 N Y N 0 -4.598 -1.665 -1.95
24 N5 N N5 N N N 0 -6.217 0.352 2.826
25 C6 C C20 R N N 0 -2.484 -0.055 -0.328
26 C7 C C21 N Y N 0 -2.302 1.423 -0.562
27 C8 C C22 N N N 0 -1.539 -0.514 0.785
28 C9 C C23 N N N 0 -0.09 -0.353 0.323
29 N6 N N6 N N N 0 0.817 -0.794 1.392
30 C10 C C24 N N N 0 2.22 -0.653 0.983
31 C14 C C25 N Y N 0 -1.969 4.134 -0.993
32 C25 C C26 N Y N 0 8.271 0.684 0.191
33 C26 C C27 N Y N 0 8.74 0.002 -0.917
34 C28 C C28 N Y N 0 6.568 -0.95 -1.25
35 H1 H H1 N N N 0 -1.706 3.62 -3.051
36 H2 H H2 N N N 0 4.425 -2.334 -0.663
37 H3 H H3 N N N 0 3.984 -0.955 -1.699
38 H4 H H4 N N N 0 1.828 -1.172 -1.071
39 H5 H H5 N N N 0 2.268 -2.551 -0.035
40 H6 H H6 N N N 0 -2.564 1.936 1.496
41 H7 H H7 N N N 0 -2.279 4.351 1.112
42 H8 H H8 N N N 0 4.488 1.638 0.924
43 H9 H H9 N N N 0 4.022 1.365 -0.772
44 H10 H H10 N N N 0 2.923 -2.167 2.345
45 H11 H H11 N N N 0 2.949 -0.514 3.005
46 H12 H H12 N N N 0 5.079 -1.95 1.717
47 H13 H H13 N N N 0 5.106 -0.298 2.377
48 H14 H H14 N N N 0 6.583 1.083 1.441
49 H15 H H15 N N N 0 2.331 1.422 1.552
50 H16 H H16 N N N 0 1.865 1.148 -0.144
51 H17 H H17 N N N 0 -2.007 1.207 -2.668
52 H18 H H18 N N N 0 8.255 -1.349 -2.501
53 H19 H H19 N N N 0 -3.766 0.713 1.926
54 H20 H H20 N N N 0 -7.583 -2.371 -1.349
55 H21 H H21 N N N 0 -5.643 0.868 3.414
56 H22 H H22 N N N 0 -7.136 0.173 3.08
57 H23 H H23 N N N 0 -2.256 -0.599 -1.245
58 H24 H H24 N N N 0 -1.706 0.091 1.676
59 H25 H H25 N N N 0 -1.733 -1.562 1.016
60 H26 H H26 N N N 0 0.077 -0.958 -0.568
61 H27 H H27 N N N 0 0.104 0.695 0.092
62 H32 H H32 N N N 0 9.77 0.11 -1.22
63 H28 H H28 N N N 0 0.614 -1.743 1.669
64 H30 H H30 N N N 0 -1.835 5.192 -1.16
65 H31 H H31 N N N 0 8.936 1.32 0.755
66 H33 H H33 N N N 0 5.903 -1.586 -1.815