Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : U9D

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 32


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C4 N N N 0 -0.257 1.31 -0.302
2 C5 C C5 S N N 0 -1.286 0.272 0.154
3 O5 O O5 N N N 0 -0.936 -1.008 -0.377
4 C6 C C6 N N N 0 -2.673 0.672 -0.351
5 O6 O O6 N N N 0 -3.649 -0.232 0.171
6 C6M C C6M N N N 0 -4.986 0.054 -0.243
7 C3 C C3 S N N 0 1.137 0.872 0.156
8 O3 O O3 N N N 0 2.112 1.797 -0.328
9 C3M C C3M N N N 0 2.375 2.884 0.563
10 C2 C C2 R N N 0 1.432 -0.523 -0.404
11 O2 O O2 N N N 0 2.7 -0.973 0.076
12 C2M C C2M N N N 0 3.383 -1.852 -0.82
13 C1 C C1 S N N 0 0.338 -1.49 0.056
14 O1 O O1 N N N 0 0.353 -1.584 1.482
15 H101 H H101 N N N 0 -0.276 1.388 -1.389
16 H102 H H102 N N N 0 -0.498 2.278 0.138
17 H11 H H11 N N N 0 -1.295 0.223 1.243
18 H131 H H131 N N N 0 -2.902 1.685 -0.02
19 H132 H H132 N N N 0 -2.688 0.633 -1.441
20 H151 H H151 N N N 0 -5.049 0.003 -1.33
21 H152 H H152 N N N 0 -5.667 -0.676 0.195
22 H153 H H153 N N N 0 -5.264 1.054 0.09
23 H16 H H16 N N N 0 1.171 0.843 1.245
24 H181 H H181 N N N 0 1.456 3.445 0.733
25 H182 H H182 N N N 0 2.744 2.495 1.512
26 H183 H H183 N N N 0 3.125 3.541 0.123
27 H19 H H19 N N N 0 1.449 -0.482 -1.493
28 H1B1 H H1B1 N N N 0 2.772 -2.738 -0.995
29 H1B2 H H1B2 N N N 0 3.56 -1.34 -1.766
30 H1B3 H H1B3 N N N 0 4.336 -2.148 -0.382
31 H1C H H1C N N N 0 0.519 -2.475 -0.375
32 H2 H H2 N N Y 0 -0.316 -2.181 1.844