Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : T8M

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 31


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 0.0 0.722 -0.231
2 C4 C C1 N N N 0 1.204 1.03 -1.015
3 C5 C C2 N Y N 0 2.362 0.216 -0.497
4 C6 C C3 N Y N 0 2.704 -0.998 -0.93
5 C7 C C4 N Y N 0 3.807 -1.551 -0.304
6 C8 C C5 N Y N 0 4.362 -0.786 0.637
7 C10 C C6 N N N 0 -1.562 -1.004 0.529
8 N N N2 N N N 0 -2.625 -0.001 0.36
9 C C C7 N N N 0 -4.261 -1.839 0.104
10 O O O1 N N N 0 -4.768 0.465 0.022
11 C1 C C8 N N N 0 -3.904 -0.376 0.159
12 C2 C C9 N N N 0 -2.255 1.421 0.417
13 C3 C C10 N N N 0 -1.086 1.659 -0.545
14 C9 C C11 N N N 0 -0.421 -0.67 -0.437
15 S S S1 N Y N 0 3.475 0.727 0.766
16 H7 H H2 N N N 0 1.028 0.785 -2.062
17 H8 H H3 N N N 0 1.436 2.091 -0.924
18 H9 H H4 N N N 0 2.16 -1.511 -1.709
19 H10 H H5 N N N 0 4.19 -2.529 -0.558
20 H11 H H6 N N N 0 5.226 -1.054 1.228
21 H15 H H7 N N N 0 -1.194 -0.977 1.554
22 H14 H H8 N N N 0 -1.953 -1.997 0.306
23 H H H9 N N N 0 -5.332 -1.945 -0.065
24 H2 H H10 N N N 0 -3.715 -2.315 -0.711
25 H1 H H11 N N N 0 -3.993 -2.314 1.047
26 H4 H H12 N N N 0 -3.106 2.033 0.117
27 H3 H H13 N N N 0 -1.957 1.682 1.432
28 H6 H H14 N N N 0 -0.727 2.682 -0.435
29 H5 H H15 N N N 0 -1.42 1.499 -1.57
30 H13 H H16 N N N 0 -0.764 -0.798 -1.464
31 H12 H H17 N N N 0 0.421 -1.337 -0.249