Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SYH

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N N N 0 -2.74 -0.594 1.19
2 C14 C C2 N N N 0 -3.839 0.671 -1.286
3 C5 C C3 N N N 0 -0.788 -0.729 -0.275
4 C6 C C4 N N N 0 0.089 -0.765 0.95
5 C11 C C5 N Y N 0 2.215 1.58 0.341
6 C7 C C6 N Y N 0 3.579 -0.379 -0.06
7 C8 C C7 N Y N 0 4.659 0.458 -0.37
8 C9 C C8 N Y N 0 4.505 1.812 -0.315
9 C10 C C9 N Y N 0 3.285 2.374 0.04
10 C12 C C10 N Y N 0 2.348 0.196 0.299
11 C13 C C11 N N N 0 -2.989 -0.612 -1.331
12 N1 N N1 N N N 0 -2.127 -0.647 -0.143
13 N2 N N2 N Y N 0 1.494 -0.854 0.543
14 C3 C C12 N N N 0 -3.578 0.686 1.3
15 N3 N N3 N Y N 0 2.232 -2.026 0.325
16 C1 C C13 N N N 0 -5.766 0.943 0.213
17 C2 C C14 N N N 0 -4.473 0.777 0.084
18 N4 N N4 N Y N 0 3.432 -1.719 -0.022
19 O1 O O1 N N N 0 -0.289 -0.773 -1.38
20 H1 H H1 N N N 0 -3.381 -1.464 1.333
21 H2 H H2 N N N 0 -1.959 -0.586 1.951
22 H3 H H3 N N N 0 -3.203 1.539 -1.462
23 H4 H H4 N N N 0 -4.616 0.624 -2.049
24 H5 H H5 N N N 0 -0.063 0.144 1.532
25 H6 H H6 N N N 0 -0.169 -1.633 1.556
26 H7 H H7 N N N 0 1.27 2.025 0.616
27 H8 H H8 N N N 0 5.612 0.032 -0.647
28 H9 H H9 N N N 0 5.339 2.455 -0.555
29 H10 H H10 N N N 0 3.182 3.448 0.078
30 H11 H H11 N N N 0 -3.644 -1.484 -1.333
31 H12 H H12 N N N 0 -2.377 -0.613 -2.233
32 H13 H H13 N N N 0 -4.188 0.649 2.203
33 H14 H H14 N N N 0 -2.92 1.554 1.337
34 H15 H H15 N N N 0 -6.393 1.005 -0.664
35 H16 H H16 N N N 0 -6.205 1.017 1.197