Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : STR

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 53


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 1.622 -0.215 -2.831
2 C2 C C2 N N N 0 1.589 0.203 -4.3
3 C3 C C3 N N N 0 0.277 -0.285 -4.882
4 O3 O O3 N N N 0 0.233 -0.907 -5.923
5 C4 C C4 N N N 0 -0.934 0.032 -4.12
6 C5 C C5 N N N 0 -0.85 0.322 -2.822
7 C6 C C6 N N N 0 -2.136 0.659 -2.089
8 C7 C C7 N N N 0 -2.195 -0.157 -0.797
9 C8 C C8 S N N 0 -0.93 0.107 0.023
10 C9 C C9 S N N 0 0.294 -0.418 -0.738
11 C10 C C10 R N N 0 0.439 0.343 -2.06
12 C11 C C11 N N N 0 1.583 -0.272 0.065
13 C12 C C12 N N N 0 1.46 -0.913 1.457
14 C13 C C13 S N N 0 0.262 -0.293 2.163
15 C14 C C14 S N N 0 -1.008 -0.641 1.341
16 C15 C C15 N N N 0 -2.125 -0.201 2.293
17 C16 C C16 N N N 0 -1.617 -0.69 3.676
18 C17 C C17 S N N 0 -0.076 -0.8 3.561
19 C18 C C18 N N N 0 0.402 1.229 2.18
20 C19 C C19 N N N 0 0.752 1.797 -1.7
21 C20 C C20 N N N 0 0.587 0.06 4.605
22 O20 O O20 N N N 0 0.013 1.027 5.044
23 C21 C C21 N N N 0 1.968 -0.284 5.1
24 H11 H 1H1 N N N 0 1.604 -1.303 -2.771
25 H12 H 2H1 N N N 0 2.545 0.148 -2.378
26 H21 H 1H2 N N N 0 2.424 -0.251 -4.834
27 H22 H 2H2 N N N 0 1.646 1.289 -4.377
28 H4 H H4 N N N 0 -1.896 0.032 -4.612
29 H61 H 1H6 N N N 0 -2.991 0.41 -2.718
30 H62 H 2H6 N N N 0 -2.153 1.722 -1.85
31 H71 H 1H7 N N N 0 -2.257 -1.218 -1.039
32 H72 H 2H7 N N N 0 -3.072 0.136 -0.22
33 H8 H H8 N N N 0 -0.823 1.176 0.208
34 H9 H H9 N N N 0 0.128 -1.474 -0.953
35 H111 H 1H11 N N N 0 2.397 -0.753 -0.476
36 H112 H 2H11 N N N 0 1.812 0.786 0.181
37 H121 H 1H12 N N N 0 1.274 -1.983 1.358
38 H122 H 2H12 N N N 0 2.375 -0.745 2.025
39 H14 H H14 N N N 0 -1.062 -1.715 1.163
40 H151 H 1H15 N N N 0 -3.066 -0.686 2.034
41 H152 H 2H15 N N N 0 -2.234 0.883 2.284
42 H161 H 1H16 N N N 0 -2.045 -1.666 3.908
43 H162 H 2H16 N N N 0 -1.884 0.029 4.449
44 H17 H H17 N N N 0 0.237 -1.838 3.674
45 H181 H 1H18 N N N 0 1.26 1.509 2.792
46 H182 H 2H18 N N N 0 0.547 1.592 1.163
47 H183 H 3H18 N N N 0 -0.501 1.673 2.599
48 H191 H 1H19 N N N 0 0.796 2.395 -2.61
49 H192 H 2H19 N N N 0 -0.029 2.185 -1.047
50 H193 H 3H19 N N N 0 1.712 1.845 -1.186
51 H211 H 1H21 N N N 0 2.28 0.446 5.845
52 H212 H 2H21 N N N 0 1.955 -1.278 5.548
53 H213 H 3H21 N N N 0 2.667 -0.271 4.264