Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SSU

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 34


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O2' O O2* N N N 0 0.137 -0.058 2.041
2 C2' C C2* R N N 0 0.748 0.163 0.786
3 C1' C C1* R N N 0 1.373 1.543 0.675
4 O4' O O4* N N N 0 2.47 1.422 -0.246
5 C4' C C4* R N N 0 2.725 0.023 -0.498
6 C5' C C5* N N N 0 2.282 -0.292 -1.921
7 O5' O O5* N N N 0 3.063 0.476 -2.819
8 P P P N N N 0 2.812 0.347 -4.417
9 S1P S S1P N N N 0 1.133 1.036 -5.105
10 OP2 O O2P N N N 0 3.104 -1.222 -4.708
11 OP3 O O3P N N Y 0 4.136 1.046 -5.041
12 C3' C C3* S N N 0 1.94 -0.742 0.56
13 O3' O O3* N N N 0 2.742 -0.809 1.739
14 N1 N N1 N N N 0 0.452 2.524 0.177
15 C6 C C6 N N N 0 0.308 2.664 -1.199
16 C5 C C5 N N N 0 -0.516 3.539 -1.779
17 C4 C C4 N N N 0 -1.338 4.427 -0.933
18 O4 O O4 N N N 0 -2.105 5.242 -1.435
19 N3 N N3 N N N 0 -1.161 4.252 0.431
20 C2 C C2 N N N 0 -0.301 3.338 1.055
21 O2 O O2 N N N 0 -0.226 3.271 2.284
22 HO2' H 2HO* N N N 0 -0.494 0.669 2.185
23 H2' H H2* N N N 0 0.0 0.004 0.0
24 H1' H H1* N N N 0 1.754 1.91 1.633
25 H4' H H4* N N N 0 3.804 -0.139 -0.41
26 H5' H 1H5* N N N 0 1.229 -0.035 -2.051
27 H5'' H 2H5* N N N 0 2.428 -1.352 -2.133
28 H2P H H2P N N N 0 3.952 -1.609 -4.402
29 H3P H H3P N N N 0 4.167 1.222 -6.006
30 H3' H H3* N N N 0 1.675 -1.764 0.277
31 HO3' H H3T N N Y 0 3.447 -0.153 1.628
32 H6 H 6H N N N 0 0.921 2.002 -1.802
33 H5 H 5H N N N 0 -0.601 3.619 -2.856
34 H3 H 3H N N N 0 -1.712 4.848 1.042