Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SGP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P S N N 0 1.744 -0.007 2.477
2 S1P S S1P N N N 0 2.298 1.458 3.485
3 O1P O O1P N N N 0 2.898 -1.122 2.343
4 O5' O O5* N N N 0 -4.259 -0.843 2.829
5 C5' C C5* N N N 0 -3.096 -0.045 3.057
6 C4' C C4* R N N 0 -1.903 -0.662 2.325
7 O4' O O4* N N N 0 -2.156 -0.688 0.911
8 C3' C C3* R N N 0 -0.643 0.198 2.552
9 O3' O O3* N N N 0 0.385 -0.657 3.103
10 C2' C C2* R N N 0 -0.196 0.593 1.121
11 O2' O O2* N N N 0 1.23 0.465 1.008
12 C1' C C1* R N N 0 -0.889 -0.481 0.251
13 N9 N N9 N Y N 0 -1.092 0.011 -1.113
14 C8 C C8 N Y N 0 -2.17 0.717 -1.564
15 N7 N N7 N Y N 0 -2.02 0.991 -2.827
16 C5 C C5 N Y N 0 -0.842 0.479 -3.26
17 C6 C C6 N N N 0 -0.172 0.469 -4.506
18 O6 O O6 N N N 0 -0.662 1.007 -5.484
19 N1 N N1 N N N 0 1.027 -0.148 -4.584
20 C2 C C2 N N N 0 1.563 -0.751 -3.485
21 N2 N N2 N N N 0 2.781 -1.374 -3.595
22 N3 N N3 N N N 0 0.951 -0.748 -2.323
23 C4 C C4 N Y N 0 -0.237 -0.152 -2.168
24 HOP1 H 1HOP N N N 0 3.089 -1.436 3.237
25 HO5' H *HO5 N N N 0 -4.987 -0.421 3.306
26 H5'1 H 1H5* N N N 0 -2.887 -0.005 4.126
27 H5'2 H 2H5* N N N 0 -3.269 0.963 2.683
28 H4' H H4* N N N 0 -1.729 -1.675 2.689
29 H3' H H3* N N N 0 -0.84 1.066 3.181
30 H2' H H2* N N N 0 -0.525 1.595 0.842
31 H1' H H1* N N N 0 -0.306 -1.402 0.242
32 H8 H H8 N N N 0 -3.019 1.005 -0.962
33 HN1 H HN1 N N N 0 1.505 -0.168 -5.427
34 HN21 H 1HN2 N N N 0 3.177 -1.805 -2.822
35 HN22 H 2HN2 N N N 0 3.243 -1.389 -4.448