Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SG6

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 34


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 1.471 -2.145 -0.717
2 O5 O O5 N N N 0 0.289 -1.342 -0.744
3 C2 C C2 R N N 0 2.696 -1.243 -0.553
4 C3 C C3 R N N 0 2.546 -0.419 0.73
5 C4 C C4 R N N 0 1.241 0.38 0.66
6 C5 C C5 R N N 0 0.071 -0.585 0.449
7 O1 O O1A N N Y 0 1.401 -3.059 0.38
8 O2 O O2A N N N 0 3.874 -2.048 -0.468
9 O3 O O3A N N N 0 3.65 0.48 0.853
10 O4 O O4A N N N 0 1.303 1.316 -0.448
11 C4B C C4B N N N 0 1.893 3.561 -1.289
12 C4C C C4C N N N 0 1.798 2.537 -0.188
13 O4D O O4D N N N 0 2.165 2.814 0.929
14 C6 C C5A N N N 0 -1.229 0.21 0.318
15 O6 O O5B N N N 0 -2.334 -0.693 0.236
16 S5C S S5C N N N 0 -3.686 -0.007 0.103
17 O5D O O5D N N N 0 -4.667 -1.026 0.238
18 O5E O O5E N N N 0 -3.638 1.141 0.939
19 N5F N N5F N N N 0 -3.801 0.55 -1.452
20 H1 H H1 N N N 0 1.552 -2.703 -1.65
21 H2 H H2 N N N 0 2.773 -0.573 -1.409
22 H3 H H3 N N N 0 2.519 -1.086 1.591
23 H4 H H4 N N N 0 1.098 0.927 1.592
24 H5 H H5 N N N 0 0.0 -1.262 1.301
25 HO1 H HO1A N N Y 0 0.647 -3.662 0.342
26 HO2 H HO2A N N Y 0 4.03 -2.601 -1.246
27 HO3 H HO3A N N Y 0 4.511 0.041 0.896
28 H4B H H4B N N N 0 1.517 3.133 -2.218
29 H4BA H H4BA N N N 0 1.298 4.435 -1.025
30 H4BB H H4BB N N N 0 2.934 3.857 -1.42
31 H61 H H5A N N N 0 -1.351 0.854 1.189
32 H62 H H5AA N N N 0 -1.192 0.821 -0.584
33 HN5F H HN5F N N N 0 -4.669 0.617 -1.88
34 HN5A H HN5A N N N 0 -3.001 0.811 -1.935