Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SAH

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 46


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 0.663 0.742 6.843
2 CA C CA S N N 0 -0.668 0.558 6.251
3 CB C CB N N N 0 -0.553 -0.315 5.0
4 CG C CG N N N 0 0.365 0.365 3.985
5 SD S SD N N N 0 0.501 -0.669 2.501
6 C C C N N N 0 -1.573 -0.112 7.251
7 O O O N N N 0 -1.112 -0.872 8.07
8 OXT O OXT N N Y 0 -2.893 0.132 7.232
9 C5' C C5* N N N 0 1.616 0.354 1.503
10 C4' C C4* S N N 0 1.883 -0.337 0.164
11 O4' O O4* N N N 0 0.652 -0.486 -0.561
12 C3' C C3* S N N 0 2.824 0.529 -0.694
13 O3' O O3* N N N 0 4.026 -0.179 -1.001
14 C2' C C2* R N N 0 2.009 0.8 -1.986
15 O2' O O2* N N N 0 2.844 0.71 -3.143
16 C1' C C1* R N N 0 0.97 -0.349 -1.963
17 N9 N N9 N Y N 0 -0.223 0.014 -2.73
18 C8 C C8 N Y N 0 -1.297 0.715 -2.267
19 N7 N N7 N Y N 0 -2.176 0.859 -3.215
20 C5 C C5 N Y N 0 -1.724 0.261 -4.344
21 C6 C C6 N Y N 0 -2.228 0.098 -5.645
22 N6 N N6 N N N 0 -3.462 0.617 -5.997
23 N1 N N1 N Y N 0 -1.493 -0.566 -6.531
24 C2 C C2 N Y N 0 -0.314 -1.065 -6.204
25 N3 N N3 N Y N 0 0.196 -0.936 -4.998
26 C4 C C4 N Y N 0 -0.463 -0.283 -4.048
27 HN1 H 1HN N N N 0 1.26 1.096 6.11
28 HN2 H 2HN N N N 0 1.006 -0.176 7.077
29 HA H HA N N N 0 -1.082 1.528 5.979
30 HB1 H 1HB N N N 0 -0.139 -1.286 5.272
31 HB2 H 2HB N N N 0 -1.541 -0.452 4.561
32 HG1 H 1HG N N N 0 -0.048 1.336 3.713
33 HG2 H 2HG N N N 0 1.354 0.502 4.424
34 HXT H HXT N N Y 0 -3.474 -0.297 7.874
35 H5'1 H 1H5* N N N 0 1.155 1.325 1.324
36 H5'2 H 2H5* N N N 0 2.557 0.491 2.035
37 H4' H H4* N N N 0 2.333 -1.315 0.336
38 H3' H H3* N N N 0 3.052 1.464 -0.184
39 H2' H H2* N N N 0 1.516 1.771 -1.94
40 HO3' H *HO3 N N N 0 4.544 0.389 -1.587
41 HO2' H *HO2 N N N 0 3.465 1.449 -3.098
42 H1' H H1* N N N 0 1.407 -1.269 -2.349
43 H8 H H8 N N N 0 -1.402 1.095 -1.262
44 HN61 H 1HN6 N N N 0 -3.799 0.498 -6.899
45 HN62 H 2HN6 N N N 0 -3.989 1.101 -5.343
46 H2 H H2 N N Y 0 0.25 -1.598 -6.954