Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : RIO

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 65


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O1 O O1 N N N 0 -2.539 2.965 -2.713
2 C1 C C1 N N N 0 -3.088 3.041 -1.396
3 C2 C C2 R N N 0 -3.564 1.653 -0.962
4 O2 O O2 N N N 0 -2.437 0.773 -0.817
5 C3 C C3 S N N 0 -2.741 -0.126 0.271
6 O3 O O3 N N N 0 -1.543 -0.688 0.81
7 C4 C C4 R N N 0 -0.851 -1.556 -0.09
8 C5 C C5 S N N 0 -1.357 -2.988 0.093
9 O4 O O4 N N N 0 -2.759 -3.037 -0.181
10 C6 C C6 R N N 0 -0.617 -3.917 -0.871
11 N1 N N1 N N N 0 -1.102 -5.293 -0.696
12 C7 C C7 N N N 0 0.884 -3.865 -0.578
13 C8 C C8 S N N 0 1.39 -2.433 -0.761
14 N2 N N2 N N N 0 2.831 -2.382 -0.479
15 C9 C C9 R N N 0 0.65 -1.503 0.203
16 O5 O O5 N N N 0 1.122 -0.166 0.032
17 C10 C C10 R N N 0 1.709 0.398 1.207
18 O6 O O6 N N N 0 3.099 0.066 1.251
19 C11 C C11 R N N 0 3.844 0.523 0.121
20 C12 C C12 N N N 0 5.304 0.088 0.263
21 N3 N N3 N N N 0 5.388 -1.376 0.189
22 C13 C C13 S N N 0 3.771 2.051 0.047
23 O7 O O7 N N N 0 4.468 2.507 -1.114
24 C14 C C14 R N N 0 2.303 2.481 -0.034
25 O8 O O8 N N N 0 2.222 3.907 -0.029
26 C15 C C15 R N N 0 1.551 1.92 1.177
27 N4 N N4 N N N 0 0.126 2.263 1.071
28 C16 C C16 R N N 0 -3.433 0.789 1.313
29 O9 O O9 N N N 0 -4.29 0.03 2.168
30 C17 C C17 S N N 0 -4.254 1.743 0.413
31 O10 O O10 N N N 0 -5.61 1.301 0.321
32 HO1 H HO1 N N N 0 -2.216 3.811 -3.054
33 H1 H H1 N N N 0 -2.324 3.396 -0.704
34 H1A H H1A N N N 0 -3.931 3.732 -1.393
35 H2 H H2 N N N 0 -4.256 1.251 -1.701
36 H3 H H3 N N N 0 -3.418 -0.914 -0.061
37 H4 H H4 N N N 0 -1.033 -1.234 -1.116
38 H5 H H5 N N N 0 -1.176 -3.309 1.118
39 HO4 H HO4 N N N 0 -3.148 -3.917 -0.085
40 H6 H H6 N N N 0 -0.798 -3.596 -1.897
41 HN1 H HN1 N N N 0 -0.628 -5.926 -1.321
42 HN1A H HN1A N N N 0 -1.004 -5.591 0.263
43 H7 H H7 N N N 0 1.066 -4.186 0.448
44 H7A H H7A N N N 0 1.412 -4.527 -1.265
45 H8 H H8 N N N 0 1.209 -2.112 -1.787
46 HN2 H HN2 N N N 0 3.353 -2.897 -1.173
47 HN2A H HN2A N N N 0 3.154 -1.429 -0.417
48 H9 H H9 N N N 0 0.831 -1.824 1.229
49 H10 H H10 N N N 0 1.212 -0.002 2.09
50 H11 H H11 N N N 0 3.424 0.095 -0.789
51 H12 H H12 N N N 0 5.894 0.527 -0.542
52 H12A H H12A N N N 0 5.692 0.427 1.224
53 HN3 H HN3 N N N 0 5.027 -1.716 -0.69
54 HN3A H HN3A N N N 0 6.335 -1.692 0.337
55 H13 H H13 N N N 0 4.229 2.48 0.939
56 HO7 H HO7 N N N 0 4.462 3.467 -1.224
57 H14 H H14 N N N 0 1.86 2.093 -0.951
58 HO8 H HO8 N N N 0 2.684 4.33 -0.766
59 H15 H H15 N N N 0 1.962 2.347 2.091
60 HN4 H HN4 N N N 0 -0.393 1.9 1.857
61 HN4A H HN4A N N N 0 0.0 3.261 0.985
62 H16 H H16 N N N 0 -2.695 1.341 1.896
63 HO9 H HO9 N N N 0 -3.831 -0.645 2.687
64 H17 H H17 N N N 0 -4.21 2.762 0.797
65 HO10 H HO10 N N N 0 -6.093 1.336 1.158