Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : R22

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 46


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1' C C1* N Y N 0 -0.488 1.613 -0.065
2 C2' C C2* N Y N 0 -0.326 2.797 -0.77
3 C3' C C3* N Y N 0 -0.595 4.006 -0.159
4 C4' C C4* N Y N 0 -1.015 4.038 1.157
5 C5' C C5* N Y N 0 -1.173 2.861 1.864
6 C6' C C6* N Y N 0 -0.91 1.648 1.257
7 O7' O O7* N N N 0 -0.228 0.422 -0.665
8 C8' C C8* N N N 0 -0.424 5.292 -0.927
9 C9' C C9* N N N 0 -1.632 2.9 3.299
10 N1 N N1 N Y N 0 -1.241 -2.507 2.025
11 C2 C C2 N Y N 0 -2.1 -2.204 1.035
12 C3 C C3 N Y N 0 -1.777 -1.21 0.103
13 C4 C C4 N Y N 0 -0.57 -0.545 0.221
14 C5 C C5 N Y N 0 0.299 -0.889 1.275
15 C6 C C6 N Y N 0 -0.055 -1.855 2.15
16 C7 C C7 N N N 0 0.878 -2.218 3.275
17 O8 O O8 N N N 0 -3.162 -2.8 0.945
18 I9 I I9 N N N 0 -3.103 -0.736 -1.448
19 C10 C C10 N N N 0 1.621 -0.181 1.427
20 S11 S S11 N N N 0 2.779 -0.787 0.168
21 C12 C C12 N N N 0 4.239 0.209 0.578
22 C13 C C13 N Y N 0 5.362 -0.135 -0.366
23 O14 O O14 N Y N 0 6.285 -1.091 -0.173
24 C15 C C15 N Y N 0 7.129 -1.116 -1.218
25 C16 C C16 N Y N 0 6.749 -0.168 -2.094
26 C17 C C17 N Y N 0 5.607 0.461 -1.547
27 H2' H H2* N N N 0 0.003 2.772 -1.799
28 H4' H H4* N N N 0 -1.221 4.985 1.634
29 H6' H H6* N N N 0 -1.034 0.729 1.809
30 H8'1 H 1H8* N N N 0 0.615 5.614 -0.87
31 H8'2 H 2H8* N N N 0 -0.699 5.131 -1.97
32 H8'3 H 3H8* N N N 0 -1.067 6.06 -0.496
33 H9'1 H 1H9* N N N 0 -0.765 2.965 3.956
34 H9'2 H 2H9* N N N 0 -2.271 3.769 3.453
35 H9'3 H 3H9* N N N 0 -2.193 1.993 3.526
36 HN1 H HN1 N N N 0 -1.475 -3.198 2.665
37 H71 H 1H7 N N N 0 0.657 -1.6 4.145
38 H72 H 2H7 N N N 0 0.745 -3.269 3.533
39 H73 H 3H7 N N N 0 1.909 -2.049 2.962
40 H101 H 1H10 N N N 0 1.476 0.892 1.3
41 H102 H 2H10 N N N 0 2.027 -0.378 2.419
42 H121 H 1H12 N N N 0 3.995 1.267 0.483
43 H122 H 2H12 N N N 0 4.547 -0.003 1.602
44 H15 H H15 N N N 0 7.97 -1.784 -1.335
45 H16 H H16 N N N 0 7.224 0.065 -3.035
46 H17 H H17 N N N 0 5.044 1.269 -1.989