Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PXY

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 18


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 0.0 0.001 1.382
2 C2 C C2 N Y N 0 1.197 0.0 0.691
3 C3 C C3 N Y N 0 1.197 0.0 -0.691
4 C4 C C4 N Y N 0 0.0 0.0 -1.382
5 C5 C C5 N Y N 0 -1.197 0.0 -0.691
6 C6 C C6 N Y N 0 -1.197 -0.002 0.691
7 C1' C C1' N N N 0 0.0 0.001 2.889
8 C4' C C4' N N N 0 0.0 0.0 -2.889
9 H2 H H2 N N N 0 2.132 -0.001 1.231
10 H3 H H3 N N N 0 2.132 -0.001 -1.231
11 H5 H H5 N N N 0 -2.132 0.001 -1.231
12 H6 H H6 N N N 0 -2.132 -0.002 1.231
13 H1'1 H 1H1' N N N 0 0.001 1.029 3.252
14 H1'2 H 2H1' N N N 0 -0.89 -0.511 3.252
15 H1'3 H 3H1' N N N 0 0.889 -0.513 3.252
16 H4'1 H 1H4' N N N 0 -0.001 -1.026 -3.252
17 H4'2 H 2H4' N N N 0 -0.889 0.515 -3.252
18 H4'3 H 3H4' N N N 0 0.89 0.513 -3.252