Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PSU

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 34


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -0.87 1.101 4.517
2 C2 C C2 N N N 0 -1.587 -0.035 4.567
3 N3 N N3 N N N 0 -1.51 -0.946 3.58
4 O2 O O2 N N N 0 -2.316 -0.243 5.518
5 C4 C C4 N N N 0 -0.71 -0.728 2.516
6 C5 C C5 N N N 0 0.053 0.461 2.453
7 C6 C C6 N N N 0 -0.043 1.357 3.458
8 O4 O O4 N N N 0 -0.639 -1.552 1.621
9 C1' C C1* S N N 0 0.959 0.726 1.278
10 C2' C C2* R N N 0 2.031 -0.38 1.165
11 O2' O O2* N N N 0 3.261 0.048 1.751
12 C3' C C3* S N N 0 2.199 -0.585 -0.357
13 C4' C C4* R N N 0 1.208 0.418 -0.986
14 O5' O O5* N N N 0 -0.409 0.741 -2.751
15 O3' O O3* N N N 0 3.537 -0.286 -0.758
16 O4' O O4* N N N 0 0.217 0.649 0.042
17 C5' C C5* N N N 0 0.553 -0.178 -2.233
18 P P P N N N 0 -1.056 0.052 -4.055
19 OP1 O O1P N N N 0 -1.701 -1.222 -3.67
20 OP2 O O2P N N N 0 -2.156 1.039 -4.694
21 OP3 O O3P N N Y 0 0.099 -0.236 -5.138
22 HN1 H HN1 N N N 0 -0.94 1.745 5.239
23 HN3 H HN3 N N N 0 -2.033 -1.761 3.631
24 H6 H H6 N N N 0 0.529 2.273 3.426
25 H1' H H1* N N N 0 1.432 1.703 1.377
26 H2' H H2* N N N 0 1.683 -1.298 1.638
27 HO2' H *HO2 N N N 0 3.905 -0.656 1.596
28 H3' H H3* N N N 0 1.936 -1.606 -0.635
29 H4' H H4* N N N 0 1.72 1.348 -1.235
30 HO3' H *HO3 N N Y 0 4.111 -0.924 -0.312
31 HOP3 H 3HOP N N N 0 0.493 0.617 -5.361
32 H5' H 1H5* N N N 0 1.315 -0.369 -2.987
33 H5'' H 2H5* N N N 0 0.058 -1.113 -1.971
34 HOP2 H 2HOP N N N 0 -2.517 0.589 -5.47