Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PST

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 36


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 0.767 -0.337 -3.993
2 OP1 O O1P N N N 0 1.653 -1.476 -4.708
3 OP2 O O2P N N Y 0 -0.327 0.221 -5.032
4 SP S SP N N N 0 1.874 1.057 -3.446
5 O5' O O5* N N N 0 0.02 -0.964 -2.712
6 C5' C C5* N N N 0 -0.745 0.089 -2.124
7 C4' C C4* R N N 0 -1.484 -0.442 -0.894
8 O4' O O4* N N N 0 -0.549 -0.82 0.141
9 C3' C C3* S N N 0 -2.324 0.681 -0.235
10 O3' O O3* N N N 0 -3.611 0.782 -0.847
11 C2' C C2* N N N 0 -2.444 0.181 1.225
12 C1' C C1* R N N 0 -1.275 -0.811 1.381
13 N1 N N1 N N N 0 -0.396 -0.377 2.47
14 C2 C C2 N N N 0 0.201 0.825 2.405
15 O2 O O2 N N N 0 0.004 1.541 1.442
16 N3 N N3 N N N 0 1.013 1.249 3.392
17 C4 C C4 N N N 0 1.237 0.469 4.469
18 O4 O O4 N N N 0 1.971 0.852 5.362
19 C5 C C5 N N N 0 0.618 -0.801 4.548
20 C5M C C5M N N N 0 0.855 -1.693 5.739
21 C6 C C6 N N N 0 -0.192 -1.2 3.544
22 HOP1 H 1HOP N N N 0 2.082 -1.06 -5.468
23 HOP2 H 2HOP N N N 0 -0.878 -0.53 -5.29
24 H5' H 1H5* N N N 0 -1.468 0.461 -2.85
25 H5'' H 2H5* N N N 0 -0.079 0.899 -1.826
26 H4' H H4* N N N 0 -2.117 -1.287 -1.164
27 H3' H H3* N N N 0 -1.799 1.635 -0.277
28 H2'' H 2H2* N N N 0 -2.335 1.011 1.922
29 HO3 H HO3 N N Y 0 -4.114 1.429 -0.334
30 H2' H 1H2* N N N 0 -3.397 -0.324 1.378
31 H1' H H1* N N N 0 -1.662 -1.808 1.592
32 HN3 H HN3 N N N 0 1.436 2.119 3.329
33 H71 H 1H5M N N N 0 1.532 -1.198 6.435
34 H72 H 2H5M N N N 0 -0.093 -1.894 6.237
35 H73 H 3H5M N N N 0 1.298 -2.632 5.407
36 H6 H H6 N N N 0 -0.675 -2.165 3.589