Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PPY

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 20


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -0.051 0.0 2.793
2 O1 O O1 N N N 0 -1.179 -0.011 3.238
3 O2 O O2 N N N 0 1.002 0.01 3.63
4 C2 C C2 N N N 0 0.168 0.001 1.318
5 O3 O O3 N N N 0 1.292 0.013 0.875
6 C3 C C3 N N N 0 -1.011 -0.01 0.381
7 C1' C C1' N Y N 0 -0.52 -0.005 -1.043
8 C2' C C2' N Y N 0 -0.283 -1.2 -1.697
9 C3' C C3' N Y N 0 0.166 -1.195 -3.004
10 C4' C C4' N Y N 0 0.379 0.003 -3.657
11 C5' C C5' N Y N 0 0.141 1.198 -3.004
12 C6' C C6' N Y N 0 -0.313 1.193 -1.699
13 HO2 H HO2 N N N 0 0.86 0.009 4.586
14 H31 H 1H3 N N N 0 -1.606 -0.906 0.557
15 H32 H 2H3 N N N 0 -1.624 0.873 0.557
16 H2' H H2' N N N 0 -0.449 -2.137 -1.186
17 H3' H H3' N N N 0 0.352 -2.129 -3.514
18 H4' H H4' N N N 0 0.731 0.007 -4.678
19 H5' H H5' N N N 0 0.307 2.135 -3.515
20 H6' H H6' N N N 0 -0.499 2.127 -1.188