Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PLP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 26


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 2.053 -0.012 1.991
2 C2 C C2 N Y N 0 1.286 -0.008 3.06
3 C2A C C2A N N N 0 1.916 -0.021 4.429
4 C3 C C3 N Y N 0 -0.098 0.002 2.942
5 O3 O O3 N N N 0 -0.884 0.007 4.047
6 C4 C C4 N Y N 0 -0.668 0.02 1.657
7 C4A C C4A N N N 0 -2.129 0.039 1.476
8 O4A O O4A N N Y 0 -2.859 0.043 2.444
9 C5 C C5 N Y N 0 0.195 0.015 0.553
10 C6 C C6 N Y N 0 1.557 -0.001 0.769
11 C5A C C5A N N N 0 -0.356 0.027 -0.849
12 O4P O O4P N N N 0 0.722 0.018 -1.785
13 P P P N N N 0 0.064 0.032 -3.254
14 O1P O O1P N N N 0 -0.759 1.251 -3.414
15 O2P O O2P N N N 0 1.229 0.023 -4.365
16 O3P O O3P N N N 0 -0.863 -1.27 -3.439
17 H2A1 H 1H2A N N N 0 2.08 1.003 4.763
18 H2A2 H 2H2A N N N 0 1.254 -0.53 5.129
19 H2A3 H 3H2A N N N 0 2.871 -0.545 4.384
20 HO3 H HO3 N N N 0 -1.061 -0.917 4.268
21 H4A H H4A N N N 0 -2.55 0.048 0.482
22 H6 H H6 N N N 0 2.229 -0.005 -0.076
23 H5A1 H 1H5A N N N 0 -0.978 -0.854 -1.002
24 H5A2 H 2H5A N N N 0 -0.957 0.925 -0.995
25 HOP2 H 2HOP N N N 0 0.793 0.031 -5.228
26 HOP3 H 3HOP N N N 0 -0.289 -2.04 -3.327