Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PL9

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 135


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C2 N N N 0 -0.113 1.372 4.547
2 C3 C C3 N N N 0 -0.412 2.667 4.674
3 C4 C C4 N N N 0 -1.284 3.122 5.785
4 C5 C C5 N N N 0 -1.814 2.1 6.742
5 C6 C C6 N N N 0 -1.491 0.8 6.608
6 C1 C C1 N N N 0 -0.619 0.354 5.483
7 C7 C C7 N N N 0 0.097 3.704 3.732
8 C8 C C8 N N N 0 -0.88 4.003 2.631
9 C9 C C9 N N N 0 -0.667 3.927 1.302
10 C10 C C10 N N N 0 -1.723 4.251 0.276
11 C11 C C11 N N N 0 0.668 3.545 0.68
12 C12 C C12 N N N 0 1.408 4.559 -0.204
13 C13 C C13 N N N 0 1.709 5.853 0.501
14 C14 C C14 N N N 0 2.773 6.135 1.278
15 C15 C C15 N N N 0 2.909 7.497 1.905
16 C16 C C16 N N N 0 3.857 5.143 1.648
17 C17 C C17 N N N 0 5.265 5.542 1.179
18 C18 C C18 N N N 0 6.305 4.526 1.559
19 C19 C C19 N N N 0 7.133 3.836 0.752
20 C20 C C20 N N N 0 8.104 2.845 1.345
21 C21 C C21 N N N 0 7.216 3.999 -0.749
22 C22 C C22 N N N 0 6.315 3.01 -1.493
23 C23 C C23 N N N 0 6.491 3.123 -2.982
24 C24 C C24 N N N 0 5.568 3.443 -3.91
25 C25 C C25 N N N 0 5.946 3.469 -5.37
26 C26 C C26 N N N 0 4.133 3.823 -3.614
27 C27 C C27 N N N 0 3.09 2.885 -4.244
28 C28 C C28 N N N 0 3.241 1.464 -3.771
29 C29 C C29 N N N 0 2.704 0.878 -2.682
30 C30 C C30 N N N 0 2.924 -0.564 -2.302
31 C34 C C34 N N N 0 -0.98 -0.01 -3.337
32 C31 C C31 N N N 0 1.804 1.615 -1.698
33 C32 C C32 N N N 0 0.409 1.022 -1.433
34 C33 C C33 N N N 0 -0.426 1.033 -2.686
35 C35 C C35 N N N 0 -1.802 0.123 -4.593
36 C36 C C36 N N N 0 -0.834 -1.457 -2.88
37 C37 C C37 N N N 0 -1.858 -1.985 -1.864
38 C38 C C38 N N N 0 -1.558 -3.406 -1.471
39 C39 C C39 N N N 0 -1.326 -3.892 -0.236
40 C40 C C40 N N N 0 -1.042 -5.36 -0.045
41 C41 C C41 N N N 0 -1.355 -3.072 1.037
42 C42 C C42 N N N 0 -2.464 -3.467 2.019
43 C43 C C43 N N N 0 -2.567 -2.555 3.211
44 C44 C C44 N N N 0 -3.356 -1.471 3.335
45 C45 C C45 N N N 0 -3.362 -0.669 4.61
46 C46 C C46 N N N 0 -4.241 -0.94 2.233
47 C47 C C47 N N N 0 -5.662 -1.503 2.301
48 C48 C C48 N N N 0 -6.533 -0.894 1.239
49 C49 C C49 N N N 0 -6.784 -1.379 0.008
50 C50 C C50 N N N 0 -7.669 -0.717 -1.009
51 C51 C C51 N N N 0 -6.185 -2.686 -0.435
52 C52 C C52 N N N 0 -2.719 2.66 7.807
53 C53 C C53 N N N 0 -1.926 -0.305 7.532
54 O1 O O1 N N N 0 -1.557 4.313 5.914
55 O2 O O2 N N N 0 -0.321 -0.826 5.318
56 HC2 H HC2 N N N 0 0.522 1.019 3.74
57 HC71 H 1HC7 N N N 0 1.07 3.396 3.337
58 HC72 H 2HC7 N N N 0 0.281 4.629 4.292
59 HC8 H HC8 N N N 0 -1.853 4.325 2.99
60 H101 H 1H10 N N N 0 -2.022 3.342 -0.256
61 H102 H 2H10 N N N 0 -2.621 4.706 0.7
62 H103 H 3H10 N N N 0 -1.327 4.965 -0.456
63 H111 H 1H11 N N N 0 0.495 2.641 0.081
64 H112 H 2H11 N N N 0 1.351 3.248 1.488
65 H121 H 1H12 N N N 0 0.841 4.772 -1.117
66 H152 H 2H15 N N N 0 2.097 8.172 1.617
67 H122 H 2H12 N N N 0 2.336 4.095 -0.551
68 H13 H H13 N N N 0 0.976 6.641 0.334
69 H151 H 1H15 N N N 0 3.849 7.967 1.605
70 H153 H 3H15 N N N 0 2.897 7.415 2.997
71 H161 H 1H16 N N N 0 3.87 5.049 2.743
72 H162 H 2H16 N N N 0 3.617 4.137 1.286
73 H171 H 1H17 N N N 0 5.533 6.485 1.671
74 H172 H 2H17 N N N 0 5.256 5.745 0.105
75 H18 H H18 N N N 0 6.38 4.348 2.63
76 H201 H 1H20 N N N 0 9.13 3.102 1.062
77 H202 H 2H20 N N N 0 7.887 1.833 0.988
78 H203 H 3H20 N N N 0 8.063 2.823 2.439
79 H211 H 1H21 N N N 0 6.966 5.022 -1.052
80 H212 H 2H21 N N N 0 8.262 3.863 -1.055
81 H221 H 1H22 N N N 0 6.57 1.981 -1.213
82 H222 H 2H22 N N N 0 5.277 3.162 -1.184
83 H23 H H23 N N N 0 7.494 2.874 -3.328
84 H251 H 1H25 N N N 0 5.341 2.754 -5.936
85 H252 H 2H25 N N N 0 6.998 3.21 -5.533
86 H253 H 3H25 N N N 0 5.785 4.469 -5.785
87 H261 H 1H26 N N N 0 3.966 4.837 -4.0
88 H262 H 2H26 N N N 0 3.96 3.906 -2.536
89 H271 H 1H27 N N N 0 3.168 2.901 -5.338
90 H272 H 2H27 N N N 0 2.102 3.286 -4.002
91 H28 H H28 N N N 0 3.873 0.861 -4.418
92 H301 H 1H30 N N N 0 3.676 -1.073 -2.908
93 H302 H 2H30 N N N 0 1.988 -1.124 -2.391
94 H303 H 3H30 N N N 0 3.264 -0.628 -1.263
95 H311 H 1H31 N N N 0 1.695 2.651 -2.045
96 H312 H 2H31 N N N 0 2.338 1.663 -0.739
97 H321 H 1H32 N N N 0 -0.111 1.626 -0.68
98 H322 H 2H32 N N N 0 0.519 0.012 -1.031
99 H33 H H33 N N N 0 -0.577 2.032 -3.086
100 H351 H 1H35 N N N 0 -2.842 -0.156 -4.392
101 H352 H 2H35 N N N 0 -1.411 -0.544 -5.369
102 H353 H 3H35 N N N 0 -1.801 1.128 -5.018
103 H361 H 1H36 N N N 0 -0.874 -2.093 -3.775
104 H362 H 2H36 N N N 0 0.171 -1.577 -2.455
105 H371 H 1H37 N N N 0 -1.876 -1.322 -0.995
106 H372 H 2H37 N N N 0 -2.862 -1.966 -2.306
107 H38 H H38 N N N 0 -1.534 -4.104 -2.307
108 H401 H 1H40 N N N 0 -1.085 -5.919 -0.986
109 H402 H 2H40 N N N 0 -1.777 -5.804 0.635
110 H403 H 3H40 N N N 0 -0.043 -5.506 0.378
111 H411 H 1H41 N N N 0 -0.39 -3.096 1.554
112 H412 H 2H41 N N N 0 -1.492 -2.017 0.763
113 H421 H 1H42 N N N 0 -3.417 -3.506 1.478
114 H422 H 2H42 N N N 0 -2.3 -4.489 2.383
115 H43 H H43 N N N 0 -1.942 -2.838 4.056
116 H451 H 1H45 N N N 0 -2.695 -1.091 5.369
117 H452 H 2H45 N N N 0 -3.034 0.357 4.414
118 H453 H 3H45 N N N 0 -4.37 -0.637 5.037
119 H461 H 1H46 N N N 0 -3.803 -1.16 1.252
120 H462 H 2H46 N N N 0 -4.264 0.156 2.295
121 H471 H 1H47 N N N 0 -5.649 -2.596 2.225
122 H472 H 2H47 N N N 0 -6.114 -1.281 3.276
123 H48 H H48 N N N 0 -7.002 0.044 1.529
124 H501 H 1H50 N N N 0 -8.174 0.174 -0.63
125 H502 H 2H50 N N N 0 -8.449 -1.412 -1.339
126 H503 H 3H50 N N N 0 -7.08 -0.422 -1.884
127 H511 H 1H51 N N N 0 -6.977 -3.403 -0.676
128 H512 H 2H51 N N N 0 -5.567 -2.536 -1.326
129 H513 H 3H51 N N N 0 -5.553 -3.138 0.337
130 H521 H 1H52 N N N 0 -2.599 3.738 7.846
131 H522 H 2H52 N N N 0 -2.456 2.224 8.766
132 H523 H 3H52 N N N 0 -3.749 2.412 7.568
133 H531 H 1H53 N N N 0 -1.141 -0.496 8.258
134 H532 H 2H53 N N N 0 -2.118 -1.203 6.952
135 H533 H 3H53 N N N 0 -2.836 -0.006 8.045