Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PEP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 15


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 0.334 -0.083 1.96
2 O1 O O1 N N N 0 1.524 -0.292 1.834
3 O2' O O2' N N N 0 -0.13 0.515 3.074
4 C2 C C2 N N N 0 -0.601 -0.484 0.894
5 C3 C C3 N N N 0 -1.907 -0.254 1.032
6 O2 O O2 N N N 0 -0.131 -1.088 -0.229
7 P P P N N N 0 0.11 0.074 -1.316
8 O1P O O1P N N N 0 1.007 1.103 -0.746
9 O2P O O2P N N N 0 0.786 -0.555 -2.635
10 O3P O O3P N N N 0 -1.299 0.747 -1.705
11 HO2 H HO2 N N N 0 0.482 0.779 3.774
12 H31 H 1H3 N N N 0 -2.602 -0.622 0.291
13 H32 H 2H3 N N N 0 -2.271 0.3 1.884
14 HOP2 H 2HOP N N N 0 0.913 0.172 -3.259
15 HOP3 H 3HOP N N N 0 -1.853 0.044 -2.072