Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PBD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 42


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CAA C CAA N N N 0 6.601 2.073 -0.078
2 CAB C CAB N N N 0 4.932 -3.272 -0.362
3 SAC S SAC N N N 0 0.355 1.512 -0.703
4 CAD C CAD N Y N 0 -8.037 -0.328 0.778
5 CAE C CAE N Y N 0 2.708 1.043 0.611
6 CAF C CAF N Y N 0 4.03 1.366 0.373
7 CAG C CAG N Y N 0 -6.938 0.444 0.872
8 CAH C CAH N Y N 0 -6.807 -0.783 -0.936
9 CAI C CAI N Y N 0 3.205 -1.28 0.234
10 CAJ C CAJ N N N 0 -3.743 -0.074 0.104
11 CAK C CAK N N N 0 -2.388 0.551 -0.232
12 CAL C CAL N N N 0 -4.859 0.754 -0.536
13 NAM N NAM N Y N 0 -7.931 -1.067 -0.336
14 NAN N NAN N N N 0 -1.319 -0.242 0.381
15 NAO N NAO N N N 0 0.952 -0.607 0.783
16 OAP O OAP N N N 0 6.246 0.691 -0.167
17 OAQ O OAQ N N N 0 5.427 -1.933 -0.307
18 CAR C CAR N N N 0 -0.032 0.123 0.219
19 CAS C CAS N Y N 0 2.292 -0.28 0.541
20 CAT C CAT N Y N 0 4.944 0.371 0.066
21 CAU C CAU N Y N 0 4.531 -0.956 -0.004
22 NAV N NAV N Y N 0 -6.157 0.156 -0.215
23 HAA H HAA N N N 0 7.664 2.189 -0.285
24 HAAA H HAAA N N N 0 6.024 2.644 -0.805
25 HAAB H HAAB N N N 0 6.384 2.439 0.926
26 HAB H HAB N N N 0 5.747 -3.951 -0.612
27 HABA H HABA N N N 0 4.516 -3.546 0.608
28 HABB H HABB N N N 0 4.155 -3.342 -1.123
29 HAD H HAD N N N 0 -8.858 -0.351 1.479
30 HAE H HAE N N N 0 1.998 1.819 0.855
31 HAF H HAF N N N 0 4.352 2.396 0.428
32 HAG H HAG N N N 0 -6.715 1.154 1.655
33 HAH H HAH N N N 0 -6.455 -1.225 -1.856
34 HAI H HAI N N N 0 2.882 -2.309 0.18
35 HAJ H HAJ N N N 0 -3.779 -1.092 -0.282
36 HAJA H HAJA N N N 0 -3.878 -0.091 1.186
37 HAK H HAK N N N 0 -2.253 0.568 -1.313
38 HAKA H HAKA N N N 0 -2.351 1.57 0.155
39 HAL H HAL N N N 0 -4.823 1.773 -0.15
40 HALA H HALA N N N 0 -4.725 0.771 -1.617
41 HNAN H HNAN N N N 0 -1.538 -1.029 0.904
42 HNAO H HNAO N N N 0 0.731 -1.358 1.356