Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : P0T

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 53


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N N N 0 -1.945 2.286 -0.57
2 C11 C C2 N Y N 0 0.055 0.181 1.611
3 C12 C C3 N Y N 0 -0.209 -0.993 -0.466
4 C13 C C4 N N N 0 -4.789 -2.694 -0.02
5 C14 C C5 N N N 0 -2.352 3.188 0.567
6 C03 C C6 R N N 0 -2.545 0.91 -0.692
7 C04 C C7 R N N 0 -2.221 0.094 0.562
8 C05 C C8 N N N 0 -4.069 1.021 -0.822
9 C06 C C9 N N N 0 -4.633 -0.37 -1.122
10 C07 C C10 N N N 0 -3.024 -1.173 0.577
11 C08 C C11 N Y N 0 -0.753 -0.248 0.569
12 C09 C C12 N N N 0 -4.079 -1.372 -0.152
13 C15 C C13 N Y N 0 1.946 -0.878 0.583
14 C16 C C14 N Y N 0 1.406 -0.136 1.615
15 C17 C C15 N Y N 0 1.143 -1.308 -0.456
16 C18 C C16 N N N 0 3.414 -1.221 0.59
17 C19 C C17 N N N 0 -1.073 2.701 -1.455
18 C20 C C18 N N N 0 4.197 -0.122 -0.131
19 C21 C C19 N N N 0 5.687 -0.47 -0.123
20 C22 C C20 N N N 0 6.471 0.629 -0.844
21 C23 C C21 N N N 0 7.961 0.281 -0.837
22 O01 O O1 N N N 0 -0.475 0.916 2.624
23 O02 O O2 N N N 0 -0.998 -1.415 -1.488
24 H1 H H1 N N N 0 -4.369 -3.405 -0.731
25 H2 H H2 N N N 0 -4.662 -3.075 0.993
26 H3 H H3 N N N 0 -5.851 -2.559 -0.227
27 H4 H H4 N N N 0 -3.214 3.785 0.266
28 H5 H H5 N N N 0 -2.615 2.583 1.434
29 H6 H H6 N N N 0 -1.524 3.849 0.821
30 H7 H H7 N N N 0 -2.138 0.409 -1.57
31 H8 H H8 N N N 0 -2.459 0.683 1.448
32 H9 H H9 N N N 0 -4.491 1.394 0.111
33 H10 H H10 N N N 0 -4.318 1.704 -1.635
34 H11 H H11 N N N 0 -5.719 -0.345 -1.037
35 H12 H H12 N N N 0 -4.357 -0.66 -2.136
36 H13 H H13 N N N 0 -2.705 -1.967 1.235
37 H16 H H16 N N N 0 2.036 0.198 2.427
38 H17 H H17 N N N 0 1.567 -1.887 -1.263
39 H18 H H18 N N N 0 3.763 -1.301 1.619
40 H19 H H19 N N N 0 3.567 -2.171 0.079
41 H20 H H20 N N N 0 -0.646 3.69 -1.37
42 H21 H H21 N N N 0 -0.78 2.055 -2.269
43 H22 H H22 N N N 0 3.848 -0.042 -1.16
44 H23 H H23 N N N 0 4.043 0.828 0.38
45 H24 H H24 N N N 0 6.037 -0.55 0.906
46 H25 H H25 N N N 0 5.841 -1.421 -0.634
47 H26 H H26 N N N 0 6.122 0.709 -1.874
48 H27 H H27 N N N 0 6.317 1.579 -0.334
49 H28 H H28 N N N 0 8.519 1.064 -1.35
50 H29 H H29 N N N 0 8.31 0.201 0.192
51 H30 H H30 N N N 0 8.115 -0.669 -1.348
52 H31 H H31 N N N 0 -0.807 0.387 3.362
53 H32 H H32 N N N 0 -1.051 -0.794 -2.227