Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : OPF

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 57


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C44 C C15 N N N 0 -1.991 -0.579 0.66
2 O43 O O4 N N N 0 -1.565 0.549 0.53
3 C42 C C16 N N N 0 -3.45 -0.867 0.416
4 C41 C C17 N N N 0 -4.165 0.427 0.02
5 C40 C C18 N N N 0 -5.646 0.135 -0.228
6 C39 C C19 N N N 0 -6.361 1.428 -0.625
7 C38 C C20 N N N 0 -7.843 1.137 -0.873
8 C37 C C21 N N N 0 -8.558 2.43 -1.269
9 N45 N N2 N N N 0 -1.158 -1.577 1.018
10 C50 C C11 S N N 0 0.279 -1.436 1.292
11 C51 C C10 N N N 0 0.991 -0.951 0.056
12 O49 O O3 N N N 0 0.363 -0.727 -0.957
13 C48 C C12 N N N 0 0.808 -2.831 1.689
14 C47 C C13 N N N 0 -0.472 -3.566 2.165
15 C46 C C14 N N N 0 -1.54 -2.989 1.206
16 N52 N N1 N N N 0 2.326 -0.765 0.076
17 C56 C C2 S N N 0 3.018 -0.293 -1.126
18 C55 C C1 N N N 0 3.34 -1.467 -2.014
19 O53 O O2 N N N 0 3.024 -2.584 -1.678
20 C36 C C3 N N N 0 4.315 0.412 -0.723
21 C35 C C4 N Y N 0 3.987 1.656 0.062
22 C34 C C5 N Y N 0 3.801 2.859 -0.593
23 C30 C C9 N Y N 0 3.866 1.593 1.438
24 C33 C C6 N Y N 0 3.496 3.998 0.127
25 C31 C C8 N Y N 0 3.565 2.733 2.159
26 C32 C C7 N Y N 0 3.375 3.935 1.503
27 O54 O O1 N N N 0 3.978 -1.273 -3.179
28 H18 H H18 N N N 0 -3.547 -1.596 -0.388
29 H19 H H19 N N N 0 -3.899 -1.266 1.326
30 H20 H H20 N N N 0 -4.068 1.156 0.823
31 H21 H H21 N N N 0 -3.716 0.826 -0.89
32 H22 H H22 N N N 0 -5.743 -0.595 -1.032
33 H23 H H23 N N N 0 -6.095 -0.264 0.681
34 H24 H H24 N N N 0 -6.265 2.158 0.179
35 H25 H H25 N N N 0 -5.912 1.828 -1.534
36 H26 H H26 N N N 0 -7.94 0.407 -1.677
37 H27 H H27 N N N 0 -8.292 0.737 0.036
38 H28 H H28 N N N 0 -9.613 2.222 -1.446
39 H29 H H29 N N N 0 -8.461 3.16 -0.465
40 H30 H H30 N N N 0 -8.109 2.829 -2.179
41 H11 H H11 N N N 0 0.434 -0.734 2.111
42 H12 H H12 N N N 0 1.246 -3.337 0.828
43 H13 H H13 N N N 0 1.532 -2.752 2.5
44 H14 H H14 N N N 0 -0.374 -4.644 2.039
45 H15 H H15 N N N 0 -0.705 -3.315 3.2
46 H16 H H16 N N N 0 -2.531 -3.057 1.655
47 H17 H H17 N N N 0 -1.516 -3.518 0.253
48 H10 H H10 N N N 0 2.829 -0.945 0.886
49 H2 H H2 N N N 0 2.377 0.405 -1.664
50 H3 H H3 N N N 0 4.918 -0.257 -0.109
51 H4 H H4 N N N 0 4.873 0.685 -1.619
52 H5 H H5 N N N 0 3.896 2.908 -1.668
53 H9 H H9 N N N 0 4.007 0.652 1.95
54 H6 H H6 N N N 0 3.351 4.938 -0.385
55 H8 H H8 N N N 0 3.471 2.684 3.234
56 H7 H H7 N N N 0 3.136 4.825 2.066
57 H1 H H1 N N N 0 4.163 -2.056 -3.714