Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : OCT

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 26


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -0.277 0.0 4.385
2 C2 C C2 N N N 0 0.558 0.0 3.104
3 C3 C C3 N N N 0 -0.371 0.0 1.889
4 C4 C C4 N N N 0 0.464 0.0 0.607
5 C5 C C5 N N N 0 -0.464 0.0 -0.607
6 C6 C C6 N N N 0 0.371 0.0 -1.889
7 C7 C C7 N N N 0 -0.558 0.0 -3.104
8 C8 C C8 N N N 0 0.277 0.0 -4.385
9 H11 H 1H1 N N N 0 -0.906 -0.89 4.409
10 H12 H 2H1 N N N 0 0.385 0.0 5.251
11 H13 H 3H1 N N N 0 -0.906 0.89 4.409
12 H21 H 1H2 N N N 0 1.187 0.89 3.08
13 H22 H 2H2 N N N 0 1.187 -0.89 3.08
14 H31 H 1H3 N N N 0 -0.999 -0.89 1.912
15 H32 H 2H3 N N N 0 -0.999 0.89 1.912
16 H52 H 2H5 N N N 0 -1.093 0.89 -0.583
17 H41 H 1H4 N N N 0 1.093 0.89 0.583
18 H42 H 2H4 N N N 0 1.093 -0.89 0.583
19 H51 H 1H5 N N N 0 -1.093 -0.89 -0.583
20 H61 H 1H6 N N N 0 0.999 0.89 -1.912
21 H62 H 2H6 N N N 0 0.999 -0.89 -1.912
22 H71 H 1H7 N N N 0 -1.187 -0.89 -3.08
23 H72 H 2H7 N N N 0 -1.187 0.89 -3.08
24 H81 H 1H8 N N N 0 -0.385 0.0 -5.251
25 H82 H 2H8 N N N 0 0.906 0.89 -4.409
26 H83 H 3H8 N N N 0 0.906 -0.89 -4.409