Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : OAK

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 37


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C9 C C9 N Y N 0 -4.172 0.676 0.924
2 C10 C C10 N Y N 0 -5.484 0.585 0.507
3 C11 C C11 N Y N 0 -5.793 -0.068 -0.673
4 C12 C C12 N Y N 0 -4.791 -0.633 -1.442
5 C13 C C13 N Y N 0 -3.475 -0.549 -1.036
6 C8 C C8 N Y N 0 -3.155 0.114 0.15
7 C7 C C7 N N N 0 -1.748 0.208 0.592
8 O7 O O7 N N N 0 -1.473 0.776 1.631
9 N1 N N1 N N N 0 -0.768 -0.336 -0.158
10 C1 C C1 R N N 0 0.627 -0.243 0.28
11 O5 O O5 N N N 0 1.246 0.885 -0.341
12 C5 C C5 R N N 0 2.609 1.085 0.038
13 C6 C C6 N N N 0 3.157 2.33 -0.662
14 O6 O O6 N N N 0 2.461 3.486 -0.192
15 C4 C C4 S N N 0 3.436 -0.137 -0.371
16 O4 O O4 N N N 0 4.788 0.036 0.058
17 C3 C C3 S N N 0 2.845 -1.388 0.286
18 O3 O O3 N N N 0 3.565 -2.542 -0.149
19 C2 C C2 R N N 0 1.373 -1.518 -0.12
20 O2 O O2 N N N 0 0.792 -2.641 0.545
21 H9 H H9 N N N 0 -3.931 1.186 1.846
22 H10 H H10 N N N 0 -6.27 1.023 1.103
23 H11 H H11 N N N 0 -6.821 -0.137 -0.996
24 H12 H H12 N N N 0 -5.039 -1.14 -2.362
25 H13 H H13 N N N 0 -2.694 -0.99 -1.637
26 HN1 H HN1 N N N 0 -0.988 -0.79 -0.987
27 H1 H H1 N N N 0 0.661 -0.126 1.363
28 H5 H H5 N N N 0 2.67 1.219 1.119
29 H61 H H6 N N N 0 4.22 2.432 -0.443
30 H62 H H6A N N N 0 3.016 2.233 -1.738
31 HO6 H HO6 N N Y 0 2.757 4.314 -0.595
32 H4 H H4 N N N 0 3.409 -0.248 -1.455
33 HO4 H HO4 N N Y 0 5.37 -0.702 -0.169
34 H3 H H3 N N N 0 2.917 -1.298 1.37
35 HO3 H HO3 N N Y 0 3.243 -3.372 0.229
36 H2 H H2 N N N 0 1.305 -1.657 -1.199
37 HO2 H HO2 N N Y 0 -0.141 -2.783 0.333