Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : NLD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O19 O O19 N N N 0 1.717 0.371 1.507
2 C15 C C15 N N N 0 1.675 0.221 0.308
3 C16 C C16 N N N 0 2.946 -0.015 -0.466
4 C17 C C17 N N N 0 4.136 -0.02 0.496
5 C18 C C18 N N N 0 5.407 -0.256 -0.278
6 O14 O O14 N N N 0 0.496 0.261 -0.332
7 C13 C C13 N N N 0 -0.687 0.486 0.478
8 C7 C C7 R N N 0 -1.926 0.498 -0.42
9 C6 C C6 R N N 0 -3.203 0.612 0.432
10 N2 N N2 N N N 0 -3.896 1.849 0.014
11 C10 C C10 N N N 0 -4.574 2.484 1.152
12 C9 C C9 N N N 0 -2.841 2.737 -0.539
13 C8 C C8 N N N 0 -1.926 1.758 -1.317
14 C2 C C2 N Y N 0 -4.091 -0.581 0.187
15 C1 C C1 N Y N 0 -4.897 -0.635 -0.934
16 N1 N N1 N Y N 0 -5.677 -1.676 -1.155
17 C5 C C5 N Y N 0 -5.72 -2.698 -0.324
18 C4 C C4 N Y N 0 -4.942 -2.715 0.818
19 C3 C C3 N Y N 0 -4.105 -1.641 1.081
20 O20 O O20 N N N 0 5.365 -0.406 -1.481
21 N21 N N21 N N N 0 6.59 -0.301 0.366
22 C22 C C22 N N N 0 7.826 -0.531 -0.387
23 C23 C C23 N N N 0 9.016 -0.536 0.575
24 H161 H H161 N N N 0 2.887 -0.976 -0.976
25 H162 H H162 N N N 0 3.077 0.779 -1.201
26 H171 H H171 N N N 0 4.195 0.942 1.006
27 H172 H H172 N N N 0 4.006 -0.814 1.231
28 H131 H H131 N N N 0 -0.781 -0.312 1.215
29 H132 H H132 N N N 0 -0.6 1.445 0.99
30 H7 H H7 N N N 0 -1.957 -0.403 -1.032
31 H6 H H6 N N N 0 -2.941 0.672 1.488
32 H81C H H81C N N N 0 -0.919 2.164 -1.411
33 H82C H H82C N N N 0 -2.346 1.534 -2.297
34 H101 H H101 N N N 0 -3.841 2.736 1.918
35 H102 H H102 N N N 0 -5.075 3.392 0.816
36 H103 H H103 N N N 0 -5.31 1.794 1.566
37 H91C H H91C N N N 0 -3.274 3.476 -1.213
38 H92C H H92C N N N 0 -2.288 3.224 0.264
39 H1 H H1 N N N 0 -4.888 0.184 -1.638
40 H3 H H3 N N N 0 -3.483 -1.628 1.964
41 H5 H H5 N N N 0 -6.371 -3.533 -0.538
42 H4 H H4 N N N 0 -4.983 -3.555 1.496
43 H231 H H231 N N N 0 9.074 0.426 1.085
44 H232 H H232 N N N 0 8.885 -1.33 1.31
45 H233 H H233 N N N 0 9.935 -0.707 0.014
46 H221 H H221 N N N 0 7.767 -1.492 -0.897
47 H222 H H222 N N N 0 7.956 0.263 -1.122
48 H21 H H21 N N N 0 6.623 -0.181 1.328