Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : NGO

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 28


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 0.638 -0.769 -1.015
2 C2 C C2 R N N 0 1.101 0.673 -0.823
3 C3 C C3 R N N 0 0.219 1.495 0.104
4 C4 C C4 S N N 0 -1.254 1.132 -0.057
5 C5 C C5 R N N 0 -1.392 -0.387 0.084
6 C6 C C6 N N N 0 -2.873 -0.771 0.095
7 C7 C C7 N N N 0 2.436 -0.735 0.313
8 C8 C C8 N N N 0 3.613 -1.3 1.066
9 N2 N N2 N N N 1 2.406 0.469 -0.144
10 O1 O O1 N N N 0 1.319 -1.448 0.052
11 O3 O O3 N N N 0 0.393 2.882 -0.195
12 O4 O O4 N N N 0 -2.024 1.783 0.955
13 O5 O O5 N N N 0 -0.743 -1.002 -1.02
14 O6 O O6 N N N 0 -3.001 -2.172 0.343
15 HC1 H HC1 N N N 0 1.049 -1.137 -1.956
16 HC2 H HC2 N N N 0 1.231 1.173 -1.783
17 HC3 H HC3 N N N 0 0.52 1.313 1.136
18 HC4 H HC4 N N N 0 -1.603 1.444 -1.042
19 HC5 H HC5 N N N 0 -0.922 -0.713 1.012
20 HC61 H 1HC6 N N N 0 -3.387 -0.215 0.879
21 HC62 H 2HC6 N N N 0 -3.317 -0.531 -0.871
22 HN H HN N N N 0 3.113 1.128 -0.06
23 HC81 H 1HC8 N N N 0 3.487 -1.11 2.132
24 HC82 H 2HC8 N N N 0 3.674 -2.374 0.893
25 HC83 H 3HC8 N N N 0 4.529 -0.823 0.718
26 HO3 H HO3 N N N 0 -0.18 3.372 0.411
27 HO4 H HO4 N N N 0 -2.946 1.526 0.814
28 HO6 H HO6 N N N 0 -3.947 -2.371 0.341