Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : NBG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 30


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 0.279 0.034 0.698
2 C2 C C2 R N N 0 1.536 -0.311 -0.104
3 C3 C C3 S N N 0 1.407 0.281 -1.512
4 C4 C C4 S N N 0 0.088 -0.201 -2.127
5 C5 C C5 R N N 0 -1.058 0.134 -1.171
6 C6 C C6 N N N 0 -2.383 -0.313 -1.792
7 C7 C C7 N N N 0 -0.194 0.128 3.086
8 C8 C C8 N N N 0 -0.061 -0.419 4.484
9 N1 N N1 N N N 0 0.408 -0.498 2.057
10 O3 O O3 N N N 0 2.501 -0.155 -2.321
11 O2 O O2 N N N 0 2.684 0.24 0.543
12 O4 O O4 N N N 0 -0.124 0.453 -3.379
13 O5 O O5 N N N 0 -0.865 -0.538 0.07
14 O6 O O6 N N N 0 -3.457 0.004 -0.905
15 O7 O O7 N N N 0 -0.842 1.134 2.888
16 H1 H H1 N N N 0 0.164 1.117 0.743
17 H2 H H2 N N N 0 1.641 -1.394 -0.172
18 H3 H H3 N N N 0 1.407 1.369 -1.453
19 H4 H H4 N N N 0 0.13 -1.279 -2.281
20 H5 H H5 N N N 0 -1.084 1.21 -1.0
21 H61 H H61 N N N 0 -2.532 0.2 -2.742
22 H62 H H62 N N N 0 -2.359 -1.39 -1.961
23 H81 H H81 N N N 0 -0.612 0.216 5.177
24 H82 H H82 N N N 0 -0.468 -1.43 4.517
25 H83 H H83 N N N 0 0.99 -0.441 4.768
26 HN1 H HN1 N N N 0 0.926 -1.303 2.215
27 HO3 H HO3 N N Y 0 3.308 0.168 -1.898
28 HO2 H HO2 N N Y 0 2.727 -0.157 1.423
29 HO4 H HO4 N N Y 0 0.619 0.215 -3.949
30 HO6 H HO6 N N Y 0 -4.271 -0.293 -1.333