Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : NAP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 76


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PA P AP R N N 0 -0.035 -0.972 0.719
2 O1A O AO1 N N N 0 0.49 -0.256 1.903
3 O2A O AO2 N N N 0 -0.725 -2.349 1.187
4 O5B O AO5* N N N 0 -1.126 -0.051 -0.026
5 C5B C AC5* N N N 0 -2.109 0.297 0.952
6 C4B C AC4* R N N 0 -3.181 1.177 0.307
7 O4B O AO4* N N N 0 -3.92 0.416 -0.663
8 C3B C AC3* R N N 0 -4.181 1.655 1.377
9 O3B O AO3* N N N 0 -4.196 3.082 1.456
10 C2B C AC2* R N N 0 -5.55 1.124 0.876
11 O2B O AO2* N N N 0 -6.576 2.099 1.071
12 C1B C AC1* R N N 0 -5.279 0.901 -0.633
13 N9A N AN9 N Y N 0 -6.196 -0.101 -1.183
14 C8A C AC8 N Y N 0 -5.978 -1.445 -1.249
15 N7A N AN7 N Y N 0 -7.0 -2.036 -1.795
16 C5A C AC5 N Y N 0 -7.938 -1.111 -2.114
17 C6A C AC6 N Y N 0 -9.21 -1.158 -2.708
18 N6A N AN6 N N N 0 -9.759 -2.363 -3.112
19 N1A N AN1 N Y N 0 -9.874 -0.019 -2.874
20 C2A C AC2 N Y N 0 -9.358 1.135 -2.492
21 N3A N AN3 N Y N 0 -8.171 1.227 -1.931
22 C4A C AC4 N Y N 0 -7.435 0.141 -1.72
23 O3 O O3 N N N 0 1.175 -1.294 -0.293
24 PN P NP N N N 0 2.39 -1.858 0.599
25 O1N O NO1 N N N 0 2.142 -3.348 0.925
26 O2N O NO2 N N N -1 2.481 -1.051 1.914
27 O5D O NO5* N N N 0 3.77 -1.71 -0.218
28 C5D C NC5* N N N 0 4.818 -2.114 0.665
29 C4D C NC4* R N N 0 6.164 -1.997 -0.053
30 O4D O NO4* N N N 0 6.466 -0.613 -0.332
31 C3D C NC3* S N N 0 7.31 -2.474 0.866
32 O3D O NO3* N N N 0 7.67 -3.822 0.559
33 C2D C NC2* R N N 0 8.478 -1.513 0.54
34 O2D O NO2* N N N 0 9.595 -2.239 0.025
35 C1D C NC1* R N N 0 7.895 -0.568 -0.534
36 N1N N NN1 N Y N 1 8.395 0.795 -0.341
37 C2N C NC2 N Y N 0 9.364 1.237 -1.116
38 C3N C NC3 N Y N 0 9.869 2.527 -0.955
39 C7N C NC7 N N N 0 10.961 3.021 -1.82
40 O7N O NO7 N N N 0 11.43 2.299 -2.678
41 N7N N NN7 N N N 0 11.437 4.272 -1.658
42 C4N C NC4 N Y N 0 9.32 3.349 0.037
43 C5N C NC5 N Y N 0 8.3 2.84 0.821
44 C6N C NC6 N Y N 0 7.859 1.547 0.601
45 P2B P AP2* N N N 0 -7.765 1.37 1.875
46 O1X O AOP1 N N N 0 -7.226 0.774 3.119
47 O2X O AOP2 N N N 0 -8.903 2.447 2.246
48 O3X O AOP3 N N N 0 -8.402 0.211 0.957
49 HOA2 H 2HOA N N N 0 -1.053 -2.783 0.387
50 H51A H AH51 N N N 0 -2.57 -0.61 1.343
51 H52A H AH52 N N N 0 -1.633 0.843 1.767
52 H4B H AH4* N N N 0 -2.714 2.037 -0.175
53 H3B H AH3* N N N 0 -3.936 1.223 2.347
54 HO3A H AHO3 N N N 0 -3.323 3.353 1.772
55 H2B H AH2* N N N 0 -5.809 0.186 1.368
56 H1B H AH1* N N N 0 -5.364 1.839 -1.182
57 H8A H AH8 N N N 0 -5.087 -1.946 -0.899
58 H61A H AH61 N N N 0 -9.265 -3.187 -2.985
59 H62A H AH62 N N N 0 -10.638 -2.382 -3.521
60 H2A H AH2 N N N 0 -9.932 2.037 -2.646
61 H51N H NH51 N N N 0 4.658 -3.148 0.97
62 H52N H NH52 N N N 0 4.819 -1.472 1.546
63 H4D H NH4* N N N 0 6.152 -2.577 -0.976
64 H3D H NH3* N N N 0 7.022 -2.385 1.913
65 HO3N H NHO3 N N N 0 8.387 -4.064 1.162
66 H2D H NH2* N N N 0 8.766 -0.948 1.427
67 HO2N H NHO2 N N N 0 9.874 -2.852 0.719
68 H1D H NH1* N N N 0 8.149 -0.927 -1.532
69 H2N H NH2 N N N 0 9.778 0.591 -1.876
70 H71N H NH71 N N N 0 12.153 4.595 -2.226
71 H72N H NH72 N N N 0 11.06 4.849 -0.976
72 H4N H NH4 N N N 0 9.684 4.355 0.187
73 H5N H NH5 N N N 0 7.853 3.445 1.596
74 H6N H NH6 N N N 0 7.063 1.146 1.211
75 HOP2 H 2HOP N N N 0 -9.594 1.97 2.725
76 HOP3 H 3HOP N N N 0 -8.74 0.64 0.16