Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : N9T

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 60


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 R N N 0 -1.645 -1.1 0.916
2 C13 C C2 N N N 0 -4.151 -2.389 0.114
3 C15 C C3 N N N 0 -2.752 -0.32 0.204
4 C17 C C4 N Y N 0 -7.513 0.484 -0.134
5 C20 C C5 N Y N 0 -9.465 1.913 -1.472
6 C21 C C6 N Y N 0 -9.249 0.583 -1.781
7 C22 C C7 N Y N 0 -8.273 -0.132 -1.111
8 C24 C C8 N Y N 0 4.473 0.915 0.414
9 C01 C C9 N N N 0 7.977 2.925 -0.175
10 C02 C C10 N Y N 0 6.725 0.919 -0.418
11 C03 C C11 N Y N 0 6.586 -0.408 -0.833
12 C04 C C12 N N N 0 7.416 -2.396 -1.841
13 C05 C C13 N Y N 0 5.398 -1.078 -0.629
14 C06 C C14 N Y N 0 4.332 -0.421 -0.003
15 C07 C C15 N N N 0 3.059 -1.107 0.227
16 C08 C C16 N N N 0 2.057 -0.417 0.841
17 C09 C C17 N N N 0 -0.306 -0.505 0.566
18 C11 C C18 N N N 0 -1.684 -2.564 0.471
19 C12 C C19 N N N 0 -3.044 -3.168 0.826
20 C14 C C20 S N N 0 -4.112 -0.925 0.559
21 C16 C C21 N N N 0 -6.449 -0.296 0.595
22 C18 C C22 N Y N 0 -7.725 1.815 0.17
23 C19 C C23 N Y N 0 -8.701 2.53 -0.499
24 C23 C C24 N N N 0 2.271 0.927 1.235
25 C25 C C25 N Y N 0 5.675 1.574 0.202
26 N01 N N1 N N N 0 0.822 -1.033 1.081
27 N02 N N2 N N N 0 -5.174 -0.177 -0.125
28 O01 O O1 N N N 0 7.899 1.57 -0.623
29 O02 O O2 N N N 0 7.625 -1.04 -1.441
30 O03 O O3 N N N 0 -0.243 0.45 -0.18
31 O04 O O4 N N N 0 1.37 1.537 1.783
32 O05 O O5 N N N 0 3.44 1.547 1.013
33 H1 H H1 N N N 0 -1.797 -1.044 1.994
34 H2 H H2 N N N 0 -3.999 -2.444 -0.964
35 H3 H H3 N N N 0 -5.12 -2.819 0.367
36 H4 H H4 N N N 0 -2.724 0.722 0.521
37 H5 H H5 N N N 0 -2.6 -0.377 -0.874
38 H6 H H6 N N N 0 -10.227 2.471 -1.995
39 H7 H H7 N N N 0 -9.845 0.101 -2.541
40 H8 H H8 N N N 0 -8.104 -1.171 -1.352
41 H9 H H9 N N N 0 8.965 3.326 -0.399
42 H10 H H10 N N N 0 7.219 3.52 -0.684
43 H11 H H11 N N N 0 7.805 2.962 0.901
44 H12 H H12 N N N 0 8.321 -2.78 -2.312
45 H13 H H13 N N N 0 7.177 -3.0 -0.965
46 H14 H H14 N N N 0 6.589 -2.442 -2.55
47 H15 H H15 N N N 0 5.291 -2.103 -0.95
48 H16 H H16 N N N 0 2.918 -2.132 -0.082
49 H17 H H17 N N N 0 -1.532 -2.62 -0.607
50 H18 H H18 N N N 0 -0.896 -3.119 0.978
51 H19 H H19 N N N 0 -3.196 -3.112 1.904
52 H20 H H20 N N N 0 -3.072 -4.211 0.509
53 H21 H H21 N N N 0 -4.264 -0.869 1.637
54 H22 H H22 N N N 0 -6.335 0.101 1.604
55 H23 H H23 N N N 0 -6.74 -1.345 0.649
56 H24 H H24 N N N 0 -7.128 2.297 0.93
57 H25 H H25 N N N 0 -8.87 3.569 -0.259
58 H26 H H26 N N N 0 5.792 2.6 0.519
59 H27 H H27 N N N 0 0.779 -1.839 1.619
60 H28 H H28 N N N 0 -5.271 -0.479 -1.083