Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : MTA

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CS C CS N N N 0 2.274 -0.298 5.543
2 S5' S S5* N N N 0 1.544 0.715 4.227
3 C5' C C5* N N N 0 0.161 -0.351 3.738
4 C4' C C4* S N N 0 -0.622 0.316 2.607
5 O4' O O4* N N N 0 0.226 0.492 1.46
6 C2' C C2* R N N 0 -1.536 -0.849 0.671
7 O2' O O2* N N N 0 -2.755 -0.796 -0.071
8 C3' C C3* S N N 0 -1.795 -0.585 2.178
9 O3' O O3* N N N 0 -3.044 0.085 2.361
10 C1' C C1* R N N 0 -0.604 0.328 0.291
11 N9 N N9 N Y N 0 0.21 -0.01 -0.877
12 C8 C C8 N Y N 0 1.4 -0.675 -0.866
13 N7 N N7 N Y N 0 1.848 -0.806 -2.08
14 C5 C C5 N Y N 0 0.977 -0.234 -2.946
15 C6 C C6 N Y N 0 0.934 -0.072 -4.341
16 N6 N N6 N N N 0 1.95 -0.561 -5.143
17 C4 C C4 N Y N 0 -0.086 0.278 -2.185
18 N1 N N1 N Y N 0 -0.106 0.56 -4.873
19 C2 C C2 N Y N 0 -1.081 1.03 -4.116
20 N3 N N3 N Y N 0 -1.082 0.901 -2.806
21 HCS1 H 1HCS N N N 0 2.58 -1.26 5.132
22 HCS2 H 2HCS N N N 0 3.143 0.213 5.956
23 HCS3 H 3HCS N N N 0 1.537 -0.457 6.33
24 H5'1 H 1H5* N N N 0 0.547 -1.311 3.395
25 H5'2 H 2H5* N N N 0 -0.496 -0.508 4.592
26 H4' H H4* N N N 0 -1.0 1.283 2.939
27 H2' H H2* N N N 0 -1.034 -1.805 0.524
28 HO2' H HO2* N N N 0 -3.288 -1.552 0.21
29 H3' H H3* N N N 0 -1.781 -1.521 2.737
30 H3T H H3T N N N 0 -3.73 -0.504 2.02
31 H1' H H1* N N N 0 -1.185 1.232 0.104
32 H8 H H8 N N N 0 1.897 -1.04 0.02
33 H61 H 1H6 N N N 0 1.909 -0.443 -6.105
34 H62 H 2H6 N N N 0 2.704 -1.022 -4.743
35 H2 H H2 N N N 0 -1.907 1.538 -4.589