Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : MJZ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 66


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 5.881 0.988 -0.899
2 C2 C C2 N N N 0 5.745 1.58 0.301
3 O2 O O2 N N N 0 5.248 0.961 1.222
4 N3 N N3 N N N 0 6.152 2.848 0.497
5 C4 C C4 N N N 0 6.705 3.548 -0.514
6 O4 O O4 N N N 0 7.074 4.695 -0.337
7 C5 C C5 N N N 0 6.853 2.937 -1.782
8 C6 C C6 N N N 0 6.437 1.664 -1.951
9 PA P PA N N N 0 0.378 -1.73 1.485
10 PB P PB N N N 0 -2.53 -1.393 1.021
11 O'P O O'P N N N 0 -5.477 2.946 2.559
12 O'Q O O'Q N N N 0 -4.195 4.41 1.513
13 C1' C C1' R N N 0 -4.758 -0.207 0.144
14 O1A O O1A N N N 0 0.646 -0.726 2.714
15 O1B O O1B N N N 0 -3.016 -2.91 0.79
16 C1C C C1C R N N 0 5.434 -0.396 -1.08
17 C2' C C2' R N N 0 -5.33 0.11 -1.24
18 N2' N N2' N N N 0 -5.013 -0.983 -2.163
19 O2A O O2A N N N 0 0.206 -3.107 2.001
20 O2B O O2B N N N 0 -2.779 -1.005 2.428
21 C2C C C2C R N N 0 6.242 -1.354 -0.169
22 O2C O O2C N N N 0 7.453 -1.764 -0.806
23 C3' C C3' R N N 0 -4.708 1.412 -1.755
24 N3' N N3' N N N 0 -5.305 1.763 -3.051
25 O3A O O3A N N N 0 -0.956 -1.279 0.704
26 O3B O O3B N N N 0 -3.348 -0.412 0.041
27 C3C C C3C S N N 0 5.269 -2.547 -0.009
28 O4' O O4' N N N 0 -4.342 3.732 -1.179
29 O3C O O3C N N N 0 5.605 -3.592 -0.924
30 C4' C C4' S N N 0 -4.98 2.53 -0.744
31 O5C O O5C N N N 0 1.631 -1.688 0.475
32 C4C C C4C R N N 0 3.887 -1.956 -0.348
33 O4C O O4C N N N 0 4.075 -0.555 -0.622
34 C5' C C5' S N N 0 -4.421 2.119 0.621
35 O5' O O5' N N N 0 -5.018 0.886 1.027
36 C5C C C5C N N N 0 2.939 -2.133 0.839
37 C6' C C6' N N N 0 -4.736 3.188 1.635
38 C7' C C7' N N N 0 -5.812 -2.066 -2.224
39 O7' O O7' N N N 0 -6.794 -2.137 -1.515
40 C8' C C8' N N N 0 -5.486 -3.19 -3.173
41 H1' H H1' N N N 0 -5.229 -1.109 0.534
42 H5 H H5 N N N 0 7.293 3.483 -2.604
43 H6 H H6 N N N 0 6.542 1.181 -2.911
44 HO'Q H HO'Q N N N 0 -4.427 5.063 2.187
45 HO1A H HO1A N N N 0 0.768 0.196 2.449
46 HO1B H HO1B N N N 0 -2.883 -3.232 -0.112
47 H1C H H1C N N N 0 5.525 -0.693 -2.125
48 H2' H H2' N N N 0 -6.412 0.225 -1.17
49 HN2' H HN2' N N N 0 -4.228 -0.926 -2.73
50 H2C H H2C N N N 0 6.451 -0.89 0.796
51 HO2C H HO2C N N N 0 7.994 -2.365 -0.275
52 H3C H H3C N N N 0 5.284 -2.917 1.016
53 H3' H H3' N N N 0 -3.633 1.28 -1.873
54 HN3' H HN3' N N N 0 -4.91 2.619 -3.411
55 HN3A H HN3A N N N 0 -5.2 1.009 -3.714
56 HO3C H HO3C N N N 0 6.489 -3.961 -0.793
57 H4' H H4' N N N 0 -6.054 2.695 -0.663
58 HO4' H HO4' N N N 0 -4.472 4.484 -0.585
59 H4C H H4C N N N 0 3.478 -2.451 -1.229
60 H5' H H5' N N N 0 -3.341 1.994 0.549
61 H5C H H5C N N N 0 2.9 -3.186 1.119
62 H5CA H H5CA N N N 0 3.301 -1.546 1.684
63 H8' H H8' N N N 0 -4.576 -2.95 -3.722
64 H8'A H H8'A N N N 0 -5.338 -4.111 -2.609
65 H8'B H H8'B N N N 0 -6.31 -3.323 -3.875
66 HN3 H HN3 N N N 0 6.047 3.26 1.369